CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18135_at

Gene name
Homology with Arabidopsis Similar to At5g67300: MYBR1 (MYB DOMAIN PROTEIN R1) (HF=2e+0)

Module size 6 genes

NF 0.48

%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.88 Contig18135_at Contig18135 - - 2e+0 At5g67300 MYBR1 (MYB DOMAIN PROTEIN R1) O.I. H.G. S.X.
0.73 88.7 0.87 Contig15427_at Contig15427 - - 7e+0 At4g29110 unknown protein O.I. H.G. S.X.
0.61 78.7 0.88 HX05P09r_at HX05P09r - - 9e-1 At5g60350 unknown protein O.I. H.G. S.X.
0.53 69.7 0.87 Contig9561_at Contig9561 - - 1e+1 At4g15780 ATVAMP724 O.I. H.G. S.X.
0.31 38.6 0.87 Contig12675_s_at Contig12675 - - 1e+0 At4g28150 unknown protein O.I. H.G. S.X.
0.26 30.4 0.88 S0001000058H07F1_s_at S0001000058H07F1 - - 4e+0 At5g50180 protein kinase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 98.5 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4 96.6 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2 96.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.7 95.5 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7 95.5 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.4 94.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
3.3 94.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2 94.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the maize gene, Zm.4327.1.S1_at, orthologous to the query gene, Contig18135_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 76.1 Zm.4327.1.S1_at At5g67300 - - 1e-15 At4g12770 heat shock protein binding O.I. H.G. S.X.
0.80 94.0 Zm.3657.1.A1_s_at At5g67300 - - 1e+0 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.77 92.1 Zm.6103.3.S1_at At5g67300 - - 8e-1 At1g21010 unknown protein O.I. H.G. S.X.
0.71 88.2 Zm.12244.1.A1_at At5g67300 - - 4e-8 At2g37500 arginine biosynthesis protein ArgJ family O.I. H.G. S.X.
0.69 86.5 Zm.6915.1.S1_at At5g67300 hypothetical protein LOC100280116 - 5e-1 At5g64160 unknown protein O.I. H.G. S.X.
0.67 85.8 Zm.6916.1.S1_at At5g67300 hypothetical protein LOC100273981 - 9e-13 At5g66750 CHR1 (CHROMATIN REMODELING 1) O.I. H.G. S.X.
0.64 81.7 Zm.16462.1.A1_at At5g67300 Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase - 7e+0 At5g57685 AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) O.I. H.G. S.X.
0.53 69.1 Zm.6180.1.S1_at At5g67300 hypothetical protein LOC100277615 - 1e-5 At4g10430 - O.I. H.G. S.X.
0.52 67.3 Zm.1682.1.A1_a_at At5g67300 hypothetical protein LOC100193549 /// ran-binding protein 1 - 6e-10 At1g07140 SIRANBP O.I. H.G. S.X.
0.52 67.3 Zm.2157.7.S1_at At5g67300 ribosomal protein S11 - 1e-38 At4g30800 40S ribosomal protein S11 (RPS11B) O.I. H.G. S.X.
0.50 65.7 Zm.7017.1.A1_at At5g67300 hypothetical protein LOC100272933 - 2e+0 At1g31760 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.48 61.3 Zm.3743.2.S1_at At5g67300 - - 2e+0 At5g04045 Expressed protein O.I. H.G. S.X.
0.47 59.9 Zm.12150.2.S1_at At5g67300 hypothetical protein LOC100273319 - 9e-1 At4g31340 myosin heavy chain-related O.I. H.G. S.X.
0.42 51.3 Zm.3743.2.A1_a_at At5g67300 hypothetical protein LOC100274177 - 2e+0 At5g04045 Expressed protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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