Co-expression analysis

Gene ID Contig18135_at
Gene name
Homology with ArabidopsisSimilar to At5g67300: MYBR1 (MYB DOMAIN PROTEIN R1) (HF=2e+0)
Module size 6 genes
NF 0.48
%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.88Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.
0.7388.70.87Contig15427_atContig15427--7e+0At4g29110unknown proteinO.I.H.G.S.X.
0.6178.70.88HX05P09r_atHX05P09r--9e-1At5g60350unknown proteinO.I.H.G.S.X.
0.5369.70.87Contig9561_atContig9561--1e+1At4g15780ATVAMP724O.I.H.G.S.X.
0.3138.60.87Contig12675_s_atContig12675--1e+0At4g28150unknown proteinO.I.H.G.S.X.
0.2630.40.88S0001000058H07F1_s_atS0001000058H07F1--4e+0At5g50180protein kinase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.496.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.296.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.795.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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