Co-expression analysis

Gene ID	Contig18130_at
Gene name
Homology with Arabidopsis	Similar to At2g37600: 60S ribosomal protein L36 (RPL36A) (HF=3e-2)
Module size	6 genes
NF	0.11
%ile	13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.80	Contig18130_at	Contig18130	-	-	3e-2	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig17791_at	Contig17791	-	-	2e-1	At1g67860	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig8683_at	Contig8683	-	-	5e-1	At1g58070	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig25599_at	Contig25599	-	-	4e+0	At4g10595	LCR2 (Low-molecular-weight cysteine-rich 2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig12204_s_at	Contig12204	-	-	4e+0	At2g45660	AGL20 (AGAMOUS-LIKE 20)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig4135_at	Contig4135	-	-	2e-7	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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