Co-expression analysis

Gene ID	Contig18125_at
Gene name
Homology with Arabidopsis	Similar to At4g13250: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-6)
Module size	6 genes
NF	0.55
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.90	Contig18125_at	Contig18125	-	-	2e-6	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	HF11O19r_at	HF11O19r	-	-	8e-5	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig4809_at	Contig4809	-	-	9e-2	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig2878_at	Contig2878	-	-	4e-1	At3g49630	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.89	Contig17801_at	Contig17801	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.90	Contig20641_at	Contig20641	-	-	9e-1	At5g01380	transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5	98.2	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0	97.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1611256_at, orthologous to the query gene, Contig18125_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	79.8	1611256_at	At4g13250	-	-	3e-14	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	1608622_at	At4g13250	hypothetical protein LOC100268116	-	2e-1	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612283_at	At4g13250	hypothetical protein LOC100256599	-	4e-8	At4g18740	transcription termination factor	O.I.	H.G.	S.X.	Please select
0.34	46.8	1606603_at	At4g13250	hypothetical protein LOC100265452	-	3e+1	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.25	30.5	1613257_at	At4g13250	hypothetical protein LOC100265105	-	3e-1	At4g26288	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1613065_at	At4g13250	similar to Os02g0125100	-	3e-48	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1622438_at	At4g13250	-	-	2e-51	At4g16520	ATG8F (autophagy 8f)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1611508_at	At4g13250	hypothetical protein LOC100250507	-	2e+0	At3g61200	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1615550_at	At4g13250	-	-	1e+0	At1g17540	kinase	O.I.	H.G.	S.X.	Please select
0.14	14.4	1609167_at	At4g13250	hypothetical protein LOC100252270	-	3e-8	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1614872_s_at	At4g13250	hypothetical protein LOC100250566	-	3e-4	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please select
0.13	13.3	1611828_s_at	At4g13250	hypothetical protein LOC100243384	-	1e-3	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1608548_s_at	At4g13250	hypothetical protein LOC100243384	-	3e+0	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1614373_at	At4g13250	hypothetical protein LOC100249178	-	2e-5	At2g25605	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1607677_at	At4g13250	-	-	2e-2	At1g49410	TOM6 (translocase of the outer mitochondrial membrane 6)	O.I.	H.G.	S.X.	Please select
0.05	6.0	1607456_at	At4g13250	hypothetical protein LOC100259397	-	3e-14	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1616186_at	At4g13250	hypothetical protein LOC100257260	-	2e-14	At4g27390	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage