Co-expression analysis

Gene ID Contig18125_at
Gene name
Homology with ArabidopsisSimilar to At4g13250: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-6)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.90Contig18125_atContig18125--2e-6At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8394.00.91HF11O19r_atHF11O19r--8e-5At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.6784.70.89Contig4809_atContig4809--9e-2At1g64370unknown proteinO.I.H.G.S.X.
0.4661.00.90Contig2878_atContig2878--4e-1At3g496302-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.3037.00.89Contig17801_atContig17801--1e+0At4g36620zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2732.10.90Contig20641_atContig20641--9e-1At5g01380transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM372954genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.598.2GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.097.9GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.897.8GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.496.6GSM372951genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM372973genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.995.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611256_at, orthologous to the query gene, Contig18125_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5879.81611256_atAt4g13250--3e-14At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4564.61608622_atAt4g13250hypothetical protein LOC100268116-2e-1At5g28850calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4464.11612283_atAt4g13250hypothetical protein LOC100256599-4e-8At4g18740transcription termination factorO.I.H.G.S.X.
0.3446.81606603_atAt4g13250hypothetical protein LOC100265452-3e+1At5g47080CKB1O.I.H.G.S.X.
0.2530.51613257_atAt4g13250hypothetical protein LOC100265105-3e-1At4g26288-O.I.H.G.S.X.
0.2124.01613065_atAt4g13250similar to Os02g0125100-3e-48At4g13430IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)O.I.H.G.S.X.
0.1616.71622438_atAt4g13250--2e-51At4g16520ATG8F (autophagy 8f)O.I.H.G.S.X.
0.1616.71611508_atAt4g13250hypothetical protein LOC100250507-2e+0At3g61200thioesterase family proteinO.I.H.G.S.X.
0.1515.61615550_atAt4g13250--1e+0At1g17540kinaseO.I.H.G.S.X.
0.1414.41609167_atAt4g13250hypothetical protein LOC100252270-3e-8At2g02390ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)O.I.H.G.S.X.
0.1313.31614872_s_atAt4g13250hypothetical protein LOC100250566-3e-4At1g19730ATTRX4O.I.H.G.S.X.
0.1313.31611828_s_atAt4g13250hypothetical protein LOC100243384-1e-3At2g24060translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.1111.31608548_s_atAt4g13250hypothetical protein LOC100243384-3e+0At5g43211unknown proteinO.I.H.G.S.X.
0.088.51614373_atAt4g13250hypothetical protein LOC100249178-2e-5At2g25605unknown proteinO.I.H.G.S.X.
0.077.81607677_atAt4g13250--2e-2At1g49410TOM6 (translocase of the outer mitochondrial membrane 6)O.I.H.G.S.X.
0.056.01607456_atAt4g13250hypothetical protein LOC100259397-3e-14At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.056.01616186_atAt4g13250hypothetical protein LOC100257260-2e-14At4g27390unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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