Co-expression analysis

Gene ID Contig18125_at
Gene name
Homology with ArabidopsisSimilar to At4g13250: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-6)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.90Contig18125_atContig18125--2e-6At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8394.00.91HF11O19r_atHF11O19r--8e-5At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.6784.70.89Contig4809_atContig4809--9e-2At1g64370unknown proteinO.I.H.G.S.X.
0.4661.00.90Contig2878_atContig2878--4e-1At3g496302-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.3037.00.89Contig17801_atContig17801--1e+0At4g36620zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2732.10.90Contig20641_atContig20641--9e-1At5g01380transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM372954genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.598.2GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.097.9GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.897.8GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.496.6GSM372951genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM372973genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.995.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6090.1.S1_at, orthologous to the query gene, Contig18125_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6Ptp.6090.1.S1_atAt4g13250hypothetical protein-5e-7At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5078.6Ptp.4050.13.A1_x_atAt4g13250hypothetical protein-5e-11At3g15353MT3 (METALLOTHIONEIN 3)O.I.H.G.S.X.
0.2136.5Ptp.4050.17.A1_atAt4g13250hypothetical protein-4e-11At3g15353MT3 (METALLOTHIONEIN 3)O.I.H.G.S.X.
0.1932.7PtpAffx.56622.1.A1_atAt4g13250--4e+0At5g52552CPuORF14 (Conserved peptide upstream open reading frame 14)O.I.H.G.S.X.
0.1932.7PtpAffx.151497.1.S1_atAt4g13250hypothetical protein-3e-28At1g52870peroxisomal membrane protein-relatedO.I.H.G.S.X.
0.1118.1PtpAffx.6085.1.S1_s_atAt4g13250hypothetical protein-1e-29At5g47860unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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