CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig18125_at

Gene name
Homology with Arabidopsis Similar to At4g13250: short-chain dehydrogenase/reductase (SDR) family protein (HF=2e-6)

Module size 6 genes

NF 0.55

%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.90 Contig18125_at Contig18125 - - 2e-6 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.83 94.0 0.91 HF11O19r_at HF11O19r - - 8e-5 At3g25140 QUA1 (QUASIMODO 1) O.I. H.G. S.X.
0.67 84.7 0.89 Contig4809_at Contig4809 - - 9e-2 At1g64370 unknown protein O.I. H.G. S.X.
0.46 61.0 0.90 Contig2878_at Contig2878 - - 4e-1 At3g49630 2-oxoacid-dependent oxidase, putative O.I. H.G. S.X.
0.30 37.0 0.89 Contig17801_at Contig17801 - - 1e+0 At4g36620 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.27 32.1 0.90 Contig20641_at Contig20641 - - 9e-1 At5g01380 transcription factor O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.7 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5 98.2 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0 97.9 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8 97.8 GSM372953 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4 96.6 GSM372951 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.2 96.3 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9 95.8 GSM372973 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9 95.8 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.12160.1.S1_a_at, orthologous to the query gene, Contig18125_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 Gma.12160.1.S1_a_at At4g13250 - - 5e-11 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.67 86.1 GmaAffx.78534.1.S1_at At4g13250 - - 8e-14 At5g19540 unknown protein O.I. H.G. S.X.
0.60 80.7 Gma.2444.2.A1_a_at At4g13250 Catalase (cat4) - 3e-16 At4g35090 CAT2 (CATALASE 2) O.I. H.G. S.X.
0.60 80.7 Gma.2444.1.S1_at At4g13250 catalase /// catalase - 2e-113 At4g35090 CAT2 (CATALASE 2) O.I. H.G. S.X.
0.50 71.7 Gma.2444.1.S1_x_at At4g13250 catalase /// catalase - 2e-113 At4g35090 CAT2 (CATALASE 2) O.I. H.G. S.X.
0.50 71.7 Gma.12160.1.S1_at At4g13250 - - 5e-11 At4g13250 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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