Co-expression analysis

Gene ID Contig18096_at
Gene name
Homology with ArabidopsisSimilar to At3g03150: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.17
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4356.40.87Contig18096_atContig18096--5e+0At3g03150unknown proteinO.I.H.G.S.X.
0.2326.10.89Contig5585_s_atContig5585--9e-8At1g48350ribosomal protein L18 family proteinO.I.H.G.S.X.
0.1919.60.90Contig11413_atContig11413--8e-1At2g21650MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)O.I.H.G.S.X.
0.1615.30.89Contig859_s_atContig859--7e-16At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.1210.40.89HVSMEf0003C10r2_atHVSMEf0003C10r2--8e+0At2g33810SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)O.I.H.G.S.X.
0.097.40.88Contig96_s_atContig96--2e-12At1g08880H2AXAO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.394.6GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.093.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.692.3GSM372990genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
2.692.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage