Co-expression analysis

Gene ID	Contig18078_at
Gene name
Homology with Arabidopsis	Similar to At1g66180: aspartyl protease family protein (HF=1e+0)
Module size	36 genes
NF	0.32
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig18078_at	Contig18078	-	-	1e+0	At1g66180	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig12253_at	Contig12253	-	-	2e+0	At2g47480	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig24881_s_at	Contig24881	-	-	5e-2	At1g75340	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	HD08D07r_s_at	HD08D07r	-	-	9e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig1641_at	Contig1641	-	-	1e-5	At5g20340	BG5 (beta-1,3-glucanase 5)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig14251_at	Contig14251	-	-	4e+0	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig11010_at	Contig11010	-	-	4e-6	At3g11960	cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig5857_s_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig7044_at	Contig7044	-	-	4e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig5311_at	Contig5311	O-methyltransferase	-	7e-1	At1g62900	O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig12607_at	Contig12607	-	-	4e-17	At3g25990	DNA-binding protein GT-1-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig2653_s_at	Contig2653	-	-	8e-2	At1g36390	co-chaperone grpE family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig10426_at	Contig10426	-	-	3e-9	At3g19630	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig7648_at	Contig7648	-	-	6e-1	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig20475_at	Contig20475	-	-	2e+0	At2g23067	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	rbah36k01_s_at	rbah36k01	-	-	1e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig10458_s_at	Contig10458	-	-	6e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig12827_at	Contig12827	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	HI05P18u_s_at	HI05P18u	-	-	4e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig14607_at	Contig14607	-	-	2e+0	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig8176_at	Contig8176	-	-	8e-32	At1g05350	thiF family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig12806_at	Contig12806	-	-	3e-30	At1g50030	TOR (TARGET OF RAPAMYCIN)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig7815_s_at	Contig7815	-	-	2e-5	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig487_s_at	Contig487	-	-	2e-3	At1g48920	ATNUC-L1	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig20343_at	Contig20343	-	-	3e-1	At2g20805	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig8695_at	Contig8695	-	-	3e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig3680_s_at	Contig3680	-	-	3e-13	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig8886_at	Contig8886	-	-	8e-18	At1g63660	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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