Co-expression analysis

Gene ID Contig18064_at
Gene name
Homology with ArabidopsisSimilar to At5g22555: unknown protein (HF=3e-1)
Module size 7 genes
NF 0.01
%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.79Contig18064_atContig18064--3e-1At5g22555unknown proteinO.I.H.G.S.X.
0.4053.10.80Contig2404_atContig2404--1e-13At4g39090RD19 (RESPONSIVE TO DEHYDRATION 19)O.I.H.G.S.X.
0.032.60.78HVSMEa0004F18f2_s_atHVSMEa0004F18f2--5e-1At3g56520no apical meristem (NAM) family proteinO.I.H.G.S.X.
0.032.60.79HVSMEk0017D04r2_atHVSMEk0017D04r2--7e-2At5g55970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.011.10.78Contig7516_atContig7516--5e-1At1g54070dormancy/auxin associated protein-relatedO.I.H.G.S.X.
0.011.10.78HW04D20u_atHW04D20u--2e+0At2g39160unknown proteinO.I.H.G.S.X.
-0.20.78Contig4995_atContig4995--2e-1At2g26290ARSK1 (root-specific kinase 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.3GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
6.198.0GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
5.997.9GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
5.497.5GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.997.1GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
4.196.2GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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