Co-expression analysis

Gene ID	Contig18058_at
Gene name
Homology with Arabidopsis	Similar to At2g32360: ubiquitin family protein (HF=7e+0)
Module size	13 genes
NF	0.54
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.91	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	Contig216_x_at	Contig216	-	-	5e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.91	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.91	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.89	Contig26379_at	Contig26379	-	-	1e+0	At5g41570	WRKY24	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	HS08J14u_x_at	HS08J14u	-	-	4e+0	At4g16265	NRPB9B	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.91	Contig11653_s_at	Contig11653	-	-	8e+0	At4g40011	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.89	Contig8122_at	Contig8122	-	-	4e-2	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	EBro03_SQ004_A01_s_at	EBro03_SQ004_A01	-	-	1e-11	At1g08250	ADT6 (arogenate dehydratase 6)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.91	HVSMEn0011A10f_x_at	HVSMEn0011A10f	-	-	2e+0	At3g47990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.91	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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