Co-expression analysis

Gene ID Contig18044_at
Gene name
Homology with ArabidopsisSimilar to At3g47070: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.58
%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.97Contig18044_atContig18044--1e+0At3g47070unknown proteinO.I.H.G.S.X.
0.6077.30.97Contig14329_atContig14329--4e-4At1g04870PRMT10O.I.H.G.S.X.
0.6077.30.97Contig6751_atContig6751--1e+0At3g04990-O.I.H.G.S.X.
0.5572.00.97Contig8220_atContig8220--6e-1At1g33040NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)O.I.H.G.S.X.
0.5572.00.97Contig5893_atContig5893--1e-52At1g04170EIF2 GAMMAO.I.H.G.S.X.
0.5369.70.97HVSMEi0002I06r2_x_atHVSMEi0002I06r2--3e+0At3g02220unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.95Contig26554_atContig26554--9e-14At5g11510MYB3R-4 (myb domain protein 3R-4)O.I.H.G.S.X.
0.6784.70.97Contig7984_s_atContig7984--3e-1At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.6784.70.97Contig13538_atContig13538--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.5774.90.96Contig10669_atContig10669--4e-9At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.5774.90.96Contig9780_atContig9780--8e-8At5g11040-O.I.H.G.S.X.
0.5572.00.96Contig10787_atContig10787--5e-5At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.5572.00.96Contig5361_atContig5361--3e+0At4g29103unknown proteinO.I.H.G.S.X.
0.5066.90.95rbags8a08_s_atrbags8a08--3e+0At5g47100CBL9O.I.H.G.S.X.
0.5066.90.96Contig17728_atContig17728--2e+0At3g21510AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)O.I.H.G.S.X.
0.5066.90.96Contig8687_atContig8687--2e-1At5g17740AAA-type ATPase family proteinO.I.H.G.S.X.
0.5066.90.96Contig10161_atContig10161--3e-3At1g19680protein binding / zinc ion bindingO.I.H.G.S.X.
0.5066.90.97Contig660_s_atContig660--1e-37At1g09200histone H3O.I.H.G.S.X.
0.5066.90.97rbah36l17_s_atrbah36l17--7e-30At1g30580GTP bindingO.I.H.G.S.X.
0.5066.90.97Contig11440_s_atContig11440--1e+0At1g06475unknown proteinO.I.H.G.S.X.
0.5066.90.97Contig835_s_atContig835--4e-6At4g32260ATP synthase familyO.I.H.G.S.X.
0.4762.20.95Contig12278_atContig12278--9e-1At5g26720unknown proteinO.I.H.G.S.X.
0.4762.20.96Contig5347_atContig5347--1e-3At1g17770SUVH7 (SU(VAR)3-9 HOMOLOG 7)O.I.H.G.S.X.
0.4661.00.95Contig15191_atContig15191--2e+0At4g07932unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig19558_atContig19558--4e-1At5g42520ATBPC6O.I.H.G.S.X.
0.4458.90.96HT12D12r_s_atHT12D12r--7e-2At3g2850060S acidic ribosomal protein P2 (RPP2C)O.I.H.G.S.X.
0.4458.90.96Contig5228_s_atContig5228--2e-17At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)O.I.H.G.S.X.
0.4356.40.96Contig25536_atContig25536--1e-1At1g70120unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig942_atContig942--8e-15At3g44110ATJ3O.I.H.G.S.X.
0.4255.20.95Contig8043_atContig8043--3e+0At5g51990CBF4 (C- REPEAT-BINDING FACTOR 4)O.I.H.G.S.X.
0.4255.20.96Contig18946_atContig18946--1e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.4255.20.95Contig5718_s_atContig5718--4e-3At1g49820ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)O.I.H.G.S.X.
0.4053.10.96Contig9691_atContig9691--6e-3At4g36830GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.3849.50.95HY03D08u_atHY03D08u--3e-1At5g23030TET12 (TETRASPANIN12)O.I.H.G.S.X.
0.3849.50.96Contig20359_atContig20359--2e+0At4g26110NAP1O.I.H.G.S.X.
0.3647.10.94Contig8989_atContig8989--1e-1At5g49230HRB1 (HYPERSENSITIVE TO RED AND BLUE)O.I.H.G.S.X.
0.3647.10.95Contig19834_atContig19834--2e-1At5g17820peroxidase 57 (PER57) (P57) (PRXR10)O.I.H.G.S.X.
0.3647.10.95Contig11835_atContig11835--5e-2At1g62400HT1 (high leaf temperature 1)O.I.H.G.S.X.
0.3647.10.96Contig6963_atContig6963--5e-11At5g02240binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.3647.10.96Contig4849_s_atContig4849--1e-4At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.3647.10.97Contig4603_atContig4603--3e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.3647.10.97Contig8972_atContig8972--8e-10At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.3647.10.95Contig8973_atContig8973--5e-10At3g47930ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)O.I.H.G.S.X.
0.3342.60.93Contig13982_atContig13982--2e-4At4g15480UGT84A1O.I.H.G.S.X.
0.3342.60.94Contig24783_atContig24783--3e-2At5g15460MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)O.I.H.G.S.X.
0.3342.60.95Contig23393_atContig23393--3e-1At1g54410dehydrin family proteinO.I.H.G.S.X.
0.3342.60.96HM03E02u_atHM03E02u--2e+1At5g48945LCR46 (Low-molecular-weight cysteine-rich 46)O.I.H.G.S.X.
0.3342.60.96Contig9110_atContig9110--2e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.3342.60.96Contig4107_s_atContig4107--2e-1At1g14450unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig10738_atContig10738--2e+0At3g55790unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig8195_atContig8195--4e-90At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.3240.30.95Contig11033_atContig11033--6e-7At2g01690bindingO.I.H.G.S.X.
0.3240.30.96Contig6545_atContig6545--1e-2At1g14250nucleoside phosphatase family protein / GDA1/CD39 family proteinO.I.H.G.S.X.
0.3138.60.93EBem05_SQ004_C15_atEBem05_SQ004_C15--4e-1At1g66080unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig23306_atContig23306--5e-10At3g43190SUS4O.I.H.G.S.X.
0.3138.60.95Contig6247_atContig6247--1e-42At1g07570APK1AO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.899.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
25.999.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
20.899.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.497.5GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM372944genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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