Co-expression analysis

Gene ID	Contig18044_at
Gene name
Homology with Arabidopsis	Similar to At3g47070: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.58
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.97	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig14329_at	Contig14329	-	-	4e-4	At1g04870	PRMT10	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.8	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
25.9	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.8	99.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.4	97.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.215564.1.S1_at, orthologous to the query gene, Contig18044_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	87.2	PtpAffx.215564.1.S1_at	At3g47070	hypothetical protein	-	8e-1	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.29133.1.S1_at	At3g47070	-	-	5e+0	At5g65740	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.30964.2.A1_at	At3g47070	hypothetical protein	-	5e+0	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.220781.1.S1_at	At3g47070	cytochrome P450	-	2e+0	At2g19850	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.66333.1.S1_at	At3g47070	-	-	1e+0	At4g05010	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.215698.1.S1_x_at	At3g47070	hypothetical protein	-	6e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.205398.1.S1_at	At3g47070	hypothetical protein	-	4e-1	At2g34330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.219081.1.S1_x_at	At3g47070	hypothetical protein	-	4e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.5235.1.S1_s_at	At3g47070	hypothetical protein	-	1e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.200468.1.S1_at	At3g47070	-	-	4e-1	At1g20100	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.112600.1.A1_at	At3g47070	hypothetical protein	-	2e+0	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.215570.1.S1_at	At3g47070	hypothetical protein	-	6e-8	At3g27090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.81767.1.A1_at	At3g47070	-	-	5e+0	At3g02125	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.200282.1.S1_at	At3g47070	hypothetical protein	-	6e-1	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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