Co-expression analysis

Gene ID	Contig18036_at
Gene name
Homology with Arabidopsis	Similar to At4g32020: unknown protein (HF=4e-4)
Module size	15 genes
NF	0.56
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.86	Contig18036_at	Contig18036	-	-	4e-4	At4g32020	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig18654_at	Contig18654	-	-	4e-1	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.88	Contig24279_at	Contig24279	-	-	1e-1	At1g22890	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.90	Contig24619_at	Contig24619	-	-	1e-1	At5g03455	CDC25	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.88	Contig18743_at	Contig18743	-	-	1e+0	At4g12350	MYB42 (myb domain protein 42)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig1795_at	Contig1795	-	-	3e-16	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig6516_at	Contig6516	-	-	6e-1	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.90	Contig1860_s_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig4199_at	Contig4199	-	-	2e-14	At1g72280	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig6515_at	Contig6515	-	-	6e-4	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.89	Contig2326_at	Contig2326	-	-	5e-3	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.89	Contig13044_at	Contig13044	-	-	4e-1	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig15497_at	Contig15497	-	-	7e+0	At5g62576	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	Contig24112_at	Contig24112	-	-	1e+0	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.92	HW02O23u_s_at	HW02O23u	-	-	1e+1	Atcg01080	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.0	96.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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