Co-expression analysis

Gene ID	Contig18000_at
Gene name	knotted 1
Homology with Arabidopsis	Similar to At1g62360: STM (SHOOT MERISTEMLESS) (HF=1e-33)
Module size	6 genes
NF	0.72
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.98	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.98	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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