Co-expression analysis

Gene ID	Contig1797_x_at
Gene name
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=1e-19)
Module size	6 genes
NF	0.61
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.92	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.93	Contig14223_at	Contig14223	-	-	2e+0	At3g61870	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	Contig6776_s_at	Contig6776	-	-	2e-3	At1g20850	XCP2 (xylem cysteine peptidase 2)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig13586_at	Contig13586	-	-	1e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig12443_at	Contig12443	-	-	7e-5	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig13291_s_at	Contig13291	-	-	5e-1	At2g30340	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.3	94.6	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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