CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein O.I. H.G. S.X.
0.83 94.0 0.87 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) O.I. H.G. S.X.
0.80 92.5 0.92 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein O.I. H.G. S.X.
0.50 66.9 0.92 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase O.I. H.G. S.X.
0.44 58.9 0.91 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.29 35.5 0.92 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.
0.83	94.0	0.87	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.
0.80	92.5	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.44	58.9	0.91	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.29	35.5	0.92	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7 99.4 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0 98.9 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4 98.8 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6 97.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.5 96.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.4 96.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.4	96.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1606755_at, orthologous to the query gene, Contig17954_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 94.9 1606755_at At3g63050 hypothetical protein LOC100248417 - 1e-6 At2g30400 OFP2 (OVATE FAMILY PROTEIN 2) O.I. H.G. S.X.
0.64 84.7 1610689_at At3g63050 hypothetical LOC100252368 - 8e-1 At1g63055 unknown protein O.I. H.G. S.X.
0.63 84.3 1617675_at At3g63050 hypothetical protein LOC100245692 - 3e-13 At5g24020 MIND O.I. H.G. S.X.
0.58 79.8 1610900_at At3g63050 hypothetical LOC100244581 - 2e-1 At1g78480 prenyltransferase/squalene oxidase repeat-containing protein O.I. H.G. S.X.
0.55 77.3 1620148_at At3g63050 hypothetical protein LOC100252338 - 3e-17 At3g58830 haloacid dehalogenase (HAD) superfamily protein O.I. H.G. S.X.
0.54 75.7 1614015_at At3g63050 - - 1e+0 At5g53220 unknown protein O.I. H.G. S.X.
0.54 75.7 1607123_at At3g63050 - - 2e-9 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.52 73.9 1618539_at At3g63050 hypothetical protein LOC100267633 - 1e-2 At2g41950 unknown protein O.I. H.G. S.X.
0.51 73.2 1614257_at At3g63050 hypothetical protein LOC100250970 - 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.50 72.7 1612453_at At3g63050 hypothetical protein LOC100248413 - 3e-46 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.49 69.3 1622017_at At3g63050 hypothetical protein LOC100241648 - 4e-34 At1g74910 ADP-glucose pyrophosphorylase family protein O.I. H.G. S.X.
0.49 69.3 1609523_at At3g63050 hypothetical protein LOC100250310 - 7e-2 At2g28020 - O.I. H.G. S.X.
0.44 64.1 1619663_at At3g63050 hypothetical protein LOC100243552 - 4e+0 At4g10920 KELP O.I. H.G. S.X.
0.43 61.5 1607315_at At3g63050 - - 4e+0 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) O.I. H.G. S.X.
0.43 61.5 1612460_s_at At3g63050 hypothetical protein LOC100245544 - 4e-20 At2g38270 CXIP2 (CAX-INTERACTING PROTEIN 2) O.I. H.G. S.X.
0.39 54.9 1616672_at At3g63050 hypothetical protein LOC100252527 - 2e-2 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.38 53.6 1614765_at At3g63050 hypothetical protein LOC100242287 - 1e-78 At3g59870 unknown protein O.I. H.G. S.X.
0.37 51.7 1607285_s_at At3g63050 hypothetical protein LOC100262997 - 3e-54 At5g52520 OVA6 (OVULE ABORTION 6) O.I. H.G. S.X.
0.37 51.7 1615236_at At3g63050 - - 1e+0 At5g48595 - O.I. H.G. S.X.
0.35 48.5 1608602_at At3g63050 hypothetical protein LOC100264906 - 4e-2 At3g09210 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) O.I. H.G. S.X.
0.26 32.0 1610491_at At3g63050 hypothetical protein LOC100247772 - 3e-20 At3g07670 SET domain-containing protein O.I. H.G. S.X.
0.26 32.0 1609245_at At3g63050 hypothetical protein LOC100249819 - 1e-6 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.
0.24 28.7 1622242_s_at At3g63050 hypothetical protein LOC100264895 - 1e+0 At5g57565 protein kinase family protein O.I. H.G. S.X.
0.17 18.2 1621233_at At3g63050 hypothetical protein LOC100265883 - 2e-12 At2g16930 ribosomal protein L27 family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.85	94.9	1606755_at	At3g63050	hypothetical protein LOC100248417	-	1e-6	At2g30400	OFP2 (OVATE FAMILY PROTEIN 2)	O.I.	H.G.	S.X.
0.64	84.7	1610689_at	At3g63050	hypothetical LOC100252368	-	8e-1	At1g63055	unknown protein	O.I.	H.G.	S.X.
0.63	84.3	1617675_at	At3g63050	hypothetical protein LOC100245692	-	3e-13	At5g24020	MIND	O.I.	H.G.	S.X.
0.58	79.8	1610900_at	At3g63050	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.
0.55	77.3	1620148_at	At3g63050	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.
0.54	75.7	1614015_at	At3g63050	-	-	1e+0	At5g53220	unknown protein	O.I.	H.G.	S.X.
0.54	75.7	1607123_at	At3g63050	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.
0.52	73.9	1618539_at	At3g63050	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	O.I.	H.G.	S.X.
0.51	73.2	1614257_at	At3g63050	hypothetical protein LOC100250970	-	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.50	72.7	1612453_at	At3g63050	hypothetical protein LOC100248413	-	3e-46	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.
0.49	69.3	1622017_at	At3g63050	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.
0.49	69.3	1609523_at	At3g63050	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	O.I.	H.G.	S.X.
0.44	64.1	1619663_at	At3g63050	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.
0.43	61.5	1607315_at	At3g63050	-	-	4e+0	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.
0.43	61.5	1612460_s_at	At3g63050	hypothetical protein LOC100245544	-	4e-20	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.
0.39	54.9	1616672_at	At3g63050	hypothetical protein LOC100252527	-	2e-2	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.38	53.6	1614765_at	At3g63050	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	1607285_s_at	At3g63050	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.
0.37	51.7	1615236_at	At3g63050	-	-	1e+0	At5g48595	-	O.I.	H.G.	S.X.
0.35	48.5	1608602_at	At3g63050	hypothetical protein LOC100264906	-	4e-2	At3g09210	PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)	O.I.	H.G.	S.X.
0.26	32.0	1610491_at	At3g63050	hypothetical protein LOC100247772	-	3e-20	At3g07670	SET domain-containing protein	O.I.	H.G.	S.X.
0.26	32.0	1609245_at	At3g63050	hypothetical protein LOC100249819	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.
0.24	28.7	1622242_s_at	At3g63050	hypothetical protein LOC100264895	-	1e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.
0.17	18.2	1621233_at	At3g63050	hypothetical protein LOC100265883	-	2e-12	At2g16930	ribosomal protein L27 family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Contig17954_at
Gene name
Homology with Arabidopsis	Similar to At3g63050: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expression analysis

Gene ID Contig17954_at Gene name Homology with ArabidopsisSimilar to At3g63050: unknown protein (HF=2e+0) Module size 6 genes NF 0.63 %ile 85.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays