CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein O.I. H.G. S.X.
0.83 94.0 0.87 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) O.I. H.G. S.X.
0.80 92.5 0.92 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein O.I. H.G. S.X.
0.50 66.9 0.92 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase O.I. H.G. S.X.
0.44 58.9 0.91 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.29 35.5 0.92 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.
0.83	94.0	0.87	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.
0.80	92.5	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.44	58.9	0.91	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.29	35.5	0.92	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7 99.4 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0 98.9 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4 98.8 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6 97.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.5 96.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.4 96.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.4	96.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.107749.1.S1_at, orthologous to the query gene, Contig17954_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.107749.1.S1_at At3g63050 - - 2e+0 At5g07910 leucine-rich repeat family protein O.I. H.G. S.X.
0.53 74.9 Ta.6158.2.A1_at At3g63050 - - 2e+0 At1g05720 selenoprotein family protein O.I. H.G. S.X.
0.53 74.9 Ta.7576.2.S1_at At3g63050 - - 2e-1 At1g19120 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.52 73.7 TaAffx.107854.1.S1_at At3g63050 - - 4e+0 At2g25700 ASK3 (ARABIDOPSIS SKP1-LIKE 3) O.I. H.G. S.X.
0.52 73.7 Ta.1096.3.S1_at At3g63050 - - 3e-3 At1g27350 - O.I. H.G. S.X.
0.48 69.0 Ta.6924.2.A1_at At3g63050 - - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) O.I. H.G. S.X.
0.47 67.9 TaAffx.3535.1.A1_at At3g63050 - - 1e+1 At5g14690 unknown protein O.I. H.G. S.X.
0.44 64.5 TaAffx.28012.1.S1_at At3g63050 - - 4e+0 At1g75800 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.44 64.5 Ta.23144.2.A1_at At3g63050 - - 4e+0 At3g20070 TTN9 (TITAN9) O.I. H.G. S.X.
0.42 60.9 Ta.21485.1.S1_at At3g63050 - - 4e+0 At5g18290 SIP1 O.I. H.G. S.X.
0.40 58.4 Ta.3065.2.A1_at At3g63050 - - 3e-4 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) O.I. H.G. S.X.
0.40 58.4 TaAffx.27077.1.S1_at At3g63050 - - 4e+0 At5g27400 unknown protein O.I. H.G. S.X.
0.39 56.1 Ta.6518.2.A1_at At3g63050 - - 2e-1 At2g41420 proline-rich family protein O.I. H.G. S.X.
0.38 54.7 TaAffx.13378.1.S1_at At3g63050 - - 8e-1 At3g19350 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) O.I. H.G. S.X.
0.38 54.7 TaAffx.6955.1.S1_x_at At3g63050 - - 3e+0 At1g63280 serpin-related / serine protease inhibitor-related O.I. H.G. S.X.
0.38 54.7 Ta.4732.3.A1_at At3g63050 - - 9e-1 At3g47540 chitinase, putative O.I. H.G. S.X.
0.37 53.0 TaAffx.80712.1.S1_at At3g63050 - - 2e+1 At5g11360 - O.I. H.G. S.X.
0.35 49.8 Ta.3069.3.A1_at At3g63050 - - 1e+0 At2g31240 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.35 49.8 TaAffx.57293.1.S1_at At3g63050 - - 4e+0 At3g44704 unknown protein O.I. H.G. S.X.
0.34 48.1 Ta.3245.2.A1_at At3g63050 - - 2e-1 At3g21580 cobalt ion transmembrane transporter O.I. H.G. S.X.
0.34 48.1 TaAffx.28148.1.S1_s_at At3g63050 - - 4e+0 At4g03950 glucose-6-phosphate/phosphate translocator, putative O.I. H.G. S.X.
0.33 46.9 TaAffx.51204.1.S1_at At3g63050 - - 3e+0 At1g15850 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.33 46.9 TaAffx.113787.1.S1_at At3g63050 - - 1e+0 At2g41905 unknown protein O.I. H.G. S.X.
0.33 46.9 TaAffx.111632.1.S1_at At3g63050 - - 1e+1 At5g25102 unknown protein O.I. H.G. S.X.
0.32 44.4 Ta.13860.2.A1_at At3g63050 - - 9e-1 At4g15450 - O.I. H.G. S.X.
0.31 42.7 Ta.23924.1.S1_at At3g63050 - - 9e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) O.I. H.G. S.X.
0.29 39.2 Ta.5938.2.S1_at At3g63050 - - 5e-1 Atmg00980 - O.I. H.G. S.X.
0.29 39.2 TaAffx.106789.1.S1_at At3g63050 - - 4e-9 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) O.I. H.G. S.X.
0.26 33.6 Ta.9185.2.S1_s_at At3g63050 - - 2e-1 At1g06090 fatty acid desaturase family protein O.I. H.G. S.X.
0.25 32.1 TaAffx.109318.1.S1_at At3g63050 - - 4e+0 At2g14560 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) O.I. H.G. S.X.
0.20 24.0 TaAffx.52253.1.S1_at At3g63050 - - 3e+0 At1g08480 unknown protein O.I. H.G. S.X.
0.20 24.0 Ta.4216.3.A1_at At3g63050 - - 1e+0 At1g32400 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.2	TaAffx.107749.1.S1_at	At3g63050	-	-	2e+0	At5g07910	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.53	74.9	Ta.6158.2.A1_at	At3g63050	-	-	2e+0	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.
0.53	74.9	Ta.7576.2.S1_at	At3g63050	-	-	2e-1	At1g19120	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.52	73.7	TaAffx.107854.1.S1_at	At3g63050	-	-	4e+0	At2g25700	ASK3 (ARABIDOPSIS SKP1-LIKE 3)	O.I.	H.G.	S.X.
0.52	73.7	Ta.1096.3.S1_at	At3g63050	-	-	3e-3	At1g27350	-	O.I.	H.G.	S.X.
0.48	69.0	Ta.6924.2.A1_at	At3g63050	-	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.
0.47	67.9	TaAffx.3535.1.A1_at	At3g63050	-	-	1e+1	At5g14690	unknown protein	O.I.	H.G.	S.X.
0.44	64.5	TaAffx.28012.1.S1_at	At3g63050	-	-	4e+0	At1g75800	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.
0.44	64.5	Ta.23144.2.A1_at	At3g63050	-	-	4e+0	At3g20070	TTN9 (TITAN9)	O.I.	H.G.	S.X.
0.42	60.9	Ta.21485.1.S1_at	At3g63050	-	-	4e+0	At5g18290	SIP1	O.I.	H.G.	S.X.
0.40	58.4	Ta.3065.2.A1_at	At3g63050	-	-	3e-4	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.27077.1.S1_at	At3g63050	-	-	4e+0	At5g27400	unknown protein	O.I.	H.G.	S.X.
0.39	56.1	Ta.6518.2.A1_at	At3g63050	-	-	2e-1	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.13378.1.S1_at	At3g63050	-	-	8e-1	At3g19350	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.6955.1.S1_x_at	At3g63050	-	-	3e+0	At1g63280	serpin-related / serine protease inhibitor-related	O.I.	H.G.	S.X.
0.38	54.7	Ta.4732.3.A1_at	At3g63050	-	-	9e-1	At3g47540	chitinase, putative	O.I.	H.G.	S.X.
0.37	53.0	TaAffx.80712.1.S1_at	At3g63050	-	-	2e+1	At5g11360	-	O.I.	H.G.	S.X.
0.35	49.8	Ta.3069.3.A1_at	At3g63050	-	-	1e+0	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.35	49.8	TaAffx.57293.1.S1_at	At3g63050	-	-	4e+0	At3g44704	unknown protein	O.I.	H.G.	S.X.
0.34	48.1	Ta.3245.2.A1_at	At3g63050	-	-	2e-1	At3g21580	cobalt ion transmembrane transporter	O.I.	H.G.	S.X.
0.34	48.1	TaAffx.28148.1.S1_s_at	At3g63050	-	-	4e+0	At4g03950	glucose-6-phosphate/phosphate translocator, putative	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.51204.1.S1_at	At3g63050	-	-	3e+0	At1g15850	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.113787.1.S1_at	At3g63050	-	-	1e+0	At2g41905	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.111632.1.S1_at	At3g63050	-	-	1e+1	At5g25102	unknown protein	O.I.	H.G.	S.X.
0.32	44.4	Ta.13860.2.A1_at	At3g63050	-	-	9e-1	At4g15450	-	O.I.	H.G.	S.X.
0.31	42.7	Ta.23924.1.S1_at	At3g63050	-	-	9e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	O.I.	H.G.	S.X.
0.29	39.2	Ta.5938.2.S1_at	At3g63050	-	-	5e-1	Atmg00980	-	O.I.	H.G.	S.X.
0.29	39.2	TaAffx.106789.1.S1_at	At3g63050	-	-	4e-9	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	O.I.	H.G.	S.X.
0.26	33.6	Ta.9185.2.S1_s_at	At3g63050	-	-	2e-1	At1g06090	fatty acid desaturase family protein	O.I.	H.G.	S.X.
0.25	32.1	TaAffx.109318.1.S1_at	At3g63050	-	-	4e+0	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.
0.20	24.0	TaAffx.52253.1.S1_at	At3g63050	-	-	3e+0	At1g08480	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.4216.3.A1_at	At3g63050	-	-	1e+0	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig17954_at
Gene name
Homology with Arabidopsis	Similar to At3g63050: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expression analysis

Gene ID Contig17954_at Gene name Homology with ArabidopsisSimilar to At3g63050: unknown protein (HF=2e+0) Module size 6 genes NF 0.63 %ile 85.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays