CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein O.I. H.G. S.X.
0.83 94.0 0.87 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) O.I. H.G. S.X.
0.80 92.5 0.92 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein O.I. H.G. S.X.
0.50 66.9 0.92 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase O.I. H.G. S.X.
0.44 58.9 0.91 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.29 35.5 0.92 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7 99.4 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0 98.9 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4 98.8 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6 97.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.5 96.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.4 96.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.9498.1.A1_at, orthologous to the query gene, Contig17954_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 PtpAffx.9498.1.A1_at At3g63050 - - 9e-16 At1g77420 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.73 93.6 PtpAffx.222336.1.S1_s_at At3g63050 hypothetical protein - 2e-11 At4g28370 protein binding / zinc ion binding O.I. H.G. S.X.
0.67 91.1 PtpAffx.6117.1.A1_a_at At3g63050 hypothetical protein - 6e-1 At1g09645 unknown protein O.I. H.G. S.X.
0.57 84.2 PtpAffx.24278.1.A1_at At3g63050 hypothetical protein - 3e-21 At4g28710 XIH O.I. H.G. S.X.
0.55 82.2 PtpAffx.6117.1.A1_at At3g63050 hypothetical protein - 6e-1 At1g09645 unknown protein O.I. H.G. S.X.
0.47 74.6 PtpAffx.155633.1.S1_at At3g63050 hypothetical protein - 9e-109 At5g59160 TOPP2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage