CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein O.I. H.G. S.X.
0.83 94.0 0.87 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) O.I. H.G. S.X.
0.80 92.5 0.92 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein O.I. H.G. S.X.
0.50 66.9 0.92 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase O.I. H.G. S.X.
0.44 58.9 0.91 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.29 35.5 0.92 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.
0.83	94.0	0.87	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.
0.80	92.5	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.44	58.9	0.91	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.29	35.5	0.92	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7 99.4 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0 98.9 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4 98.8 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6 97.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.5 96.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.4 96.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.4	96.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the rice gene, Os01g0688200, orthologous to the query gene, Contig17954_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.4 Os01g0688200 At3g63050 - Alpha/beta hydrolase family protein 5e-4 At1g77420 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.38 46.9 Os12g0189900 At3g63050 - Las1-like family protein 1e-1 At1g56310 3'-5' exonuclease domain-containing protein O.I. H.G. S.X.
0.35 41.7 Os02g0195000 At3g63050 - Conserved hypothetical protein 9e-4 At3g12150 unknown protein O.I. H.G. S.X.
0.29 31.1 Os06g0104100 At3g63050 - Terpenoid synthase domain containing protein 2e-4 At1g62730 transferase O.I. H.G. S.X.
0.29 31.1 Os04g0449000 At3g63050 - Mitochondrial brown fat uncoupling protein familyprotein 3e+0 At5g60840 unknown protein O.I. H.G. S.X.
0.27 27.5 Os11g0222200 At3g63050 - Proteinase inhibitor I4, serpin family protein 8e-1 At1g63590 receptor-like protein kinase-related O.I. H.G. S.X.
0.26 25.6 Os02g0659600 At3g63050 - Conserved hypothetical protein 2e+0 At3g18215 unknown protein O.I. H.G. S.X.
0.24 22.4 Os07g0123700 At3g63050 - WD40-like domain containing protein 3e+0 At5g14420 RGLG2 (RING domain Ligase2) O.I. H.G. S.X.
0.24 22.4 Os03g0581600 At3g63050 - DAG protein, chloroplast precursor 8e-5 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.
0.23 21.2 Os01g0847900 At3g63050 - Prenylated rab acceptor PRA1 family protein 6e-7 At3g11397 PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3) O.I. H.G. S.X.
0.22 19.4 Os07g0647300 At3g63050 - Mitochondrial import inner membrane translocase,subunit Tim44 family protein 2e+0 At1g58055 - O.I. H.G. S.X.
0.22 19.4 Os08g0245400 At3g63050 - Aminotransferase class-III family protein 6e-6 At5g57590 BIO1 (biotin auxotroph 1) O.I. H.G. S.X.
0.22 19.4 Os01g0777000 At3g63050 - Conserved hypothetical protein 1e-1 At3g60290 oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.22 19.4 Os01g0168300 At3g63050 - Conserved hypothetical protein 7e-10 At3g56430 - O.I. H.G. S.X.
0.21 17.9 Os02g0478500 At3g63050 - Zn-finger, CCHC type domain containing protein 9e-5 At5g22630 ADT5 (arogenate dehydratase 5) O.I. H.G. S.X.
0.20 16.5 Os01g0496900 At3g63050 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein O.I. H.G. S.X.
0.20 16.5 Os01g0225200 At3g63050 - - 8e-12 At5g39960 GTP-binding family protein O.I. H.G. S.X.
0.20 16.5 Os03g0105700 At3g63050 - Protein of unknown function DUF296 domaincontaining protein 3e+0 At5g44570 unknown protein O.I. H.G. S.X.
0.19 15.1 Os03g0266200 At3g63050 - Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2)(Allergen Hev b 9) 2e-1 At3g52090 NRPB11 O.I. H.G. S.X.
0.19 15.1 Os04g0628000 At3g63050 - Arabidopsis thaliana protein of unknown functionDUF794 family protein 6e-2 At3g23930 unknown protein O.I. H.G. S.X.
0.17 12.6 Os02g0566800 At3g63050 - Glycosyl transferase, family 31 protein 1e-23 At1g05170 galactosyltransferase family protein O.I. H.G. S.X.
0.16 11.3 Os03g0627300 At3g63050 - ATP binding protein-like 4e-25 At4g19540 INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) O.I. H.G. S.X.
0.15 10.3 Os05g0144000 At3g63050 - Membrane bound O-acyl transferase, MBOAT familyprotein 2e-5 At1g57600 membrane bound O-acyl transferase (MBOAT) family protein O.I. H.G. S.X.
0.14 9.3 Os12g0409600 At3g63050 - - 6e+0 At5g18300 anac088 (Arabidopsis NAC domain containing protein 88) O.I. H.G. S.X.
0.10 5.7 Os01g0506200 At3g63050 - TPR-like domain containing protein 4e+0 At3g02540 RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) O.I. H.G. S.X.
0.10 5.7 Os11g0167200 At3g63050 - Hypothetical protein 7e-1 At1g13360 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.94	99.4	Os01g0688200	At3g63050	-	Alpha/beta hydrolase family protein	5e-4	At1g77420	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.38	46.9	Os12g0189900	At3g63050	-	Las1-like family protein	1e-1	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.
0.35	41.7	Os02g0195000	At3g63050	-	Conserved hypothetical protein	9e-4	At3g12150	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	Os06g0104100	At3g63050	-	Terpenoid synthase domain containing protein	2e-4	At1g62730	transferase	O.I.	H.G.	S.X.
0.29	31.1	Os04g0449000	At3g63050	-	Mitochondrial brown fat uncoupling protein familyprotein	3e+0	At5g60840	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	Os11g0222200	At3g63050	-	Proteinase inhibitor I4, serpin family protein	8e-1	At1g63590	receptor-like protein kinase-related	O.I.	H.G.	S.X.
0.26	25.6	Os02g0659600	At3g63050	-	Conserved hypothetical protein	2e+0	At3g18215	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	Os07g0123700	At3g63050	-	WD40-like domain containing protein	3e+0	At5g14420	RGLG2 (RING domain Ligase2)	O.I.	H.G.	S.X.
0.24	22.4	Os03g0581600	At3g63050	-	DAG protein, chloroplast precursor	8e-5	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.
0.23	21.2	Os01g0847900	At3g63050	-	Prenylated rab acceptor PRA1 family protein	6e-7	At3g11397	PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)	O.I.	H.G.	S.X.
0.22	19.4	Os07g0647300	At3g63050	-	Mitochondrial import inner membrane translocase,subunit Tim44 family protein	2e+0	At1g58055	-	O.I.	H.G.	S.X.
0.22	19.4	Os08g0245400	At3g63050	-	Aminotransferase class-III family protein	6e-6	At5g57590	BIO1 (biotin auxotroph 1)	O.I.	H.G.	S.X.
0.22	19.4	Os01g0777000	At3g63050	-	Conserved hypothetical protein	1e-1	At3g60290	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.
0.22	19.4	Os01g0168300	At3g63050	-	Conserved hypothetical protein	7e-10	At3g56430	-	O.I.	H.G.	S.X.
0.21	17.9	Os02g0478500	At3g63050	-	Zn-finger, CCHC type domain containing protein	9e-5	At5g22630	ADT5 (arogenate dehydratase 5)	O.I.	H.G.	S.X.
0.20	16.5	Os01g0496900	At3g63050	-	P-type trefoil domain containing protein	2e-39	At3g16200	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	Os01g0225200	At3g63050	-	-	8e-12	At5g39960	GTP-binding family protein	O.I.	H.G.	S.X.
0.20	16.5	Os03g0105700	At3g63050	-	Protein of unknown function DUF296 domaincontaining protein	3e+0	At5g44570	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	Os03g0266200	At3g63050	-	Enolase 2 (EC 4.2.1.11) (2-phosphoglyceratedehydratase 2) (2-phospho- D-glycerate hydro-lyase 2)(Allergen Hev b 9)	2e-1	At3g52090	NRPB11	O.I.	H.G.	S.X.
0.19	15.1	Os04g0628000	At3g63050	-	Arabidopsis thaliana protein of unknown functionDUF794 family protein	6e-2	At3g23930	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	Os02g0566800	At3g63050	-	Glycosyl transferase, family 31 protein	1e-23	At1g05170	galactosyltransferase family protein	O.I.	H.G.	S.X.
0.16	11.3	Os03g0627300	At3g63050	-	ATP binding protein-like	4e-25	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	O.I.	H.G.	S.X.
0.15	10.3	Os05g0144000	At3g63050	-	Membrane bound O-acyl transferase, MBOAT familyprotein	2e-5	At1g57600	membrane bound O-acyl transferase (MBOAT) family protein	O.I.	H.G.	S.X.
0.14	9.3	Os12g0409600	At3g63050	-	-	6e+0	At5g18300	anac088 (Arabidopsis NAC domain containing protein 88)	O.I.	H.G.	S.X.
0.10	5.7	Os01g0506200	At3g63050	-	TPR-like domain containing protein	4e+0	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.
0.10	5.7	Os11g0167200	At3g63050	-	Hypothetical protein	7e-1	At1g13360	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig17954_at
Gene name
Homology with Arabidopsis	Similar to At3g63050: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expression analysis

Gene ID Contig17954_at Gene name Homology with ArabidopsisSimilar to At3g63050: unknown protein (HF=2e+0) Module size 6 genes NF 0.63 %ile 85.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays