Co-expression analysis

Gene ID	Contig17954_at
Gene name
Homology with Arabidopsis	Similar to At3g63050: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.87	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.4	96.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2794.1.S1_at, orthologous to the query gene, Contig17954_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.2794.1.S1_at	At3g63050	-	-	4e-1	At5g16120	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.16265.1.S1_at	At3g63050	-	-	4e-13	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.92802.1.S1_s_at	At3g63050	-	-	8e-33	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.16291.1.S1_at	At3g63050	-	-	9e-128	At3g23300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.15261.1.S1_at	At3g63050	-	-	5e+0	At5g48690	-	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.2314.1.S1_at	At3g63050	-	-	1e-33	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage