CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.91 Contig17954_at Contig17954 - - 2e+0 At3g63050 unknown protein O.I. H.G. S.X.
0.83 94.0 0.87 Contig15846_at Contig15846 - - 3e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) O.I. H.G. S.X.
0.80 92.5 0.92 Contig25390_at Contig25390 - - 6e+0 At1g06330 copper-binding family protein O.I. H.G. S.X.
0.50 66.9 0.92 EBro04_SQ003_G13_at EBro04_SQ003_G13 - - 2e+0 At5g44450 methyltransferase O.I. H.G. S.X.
0.44 58.9 0.91 Contig18560_at Contig18560 - - 2e-9 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.29 35.5 0.92 Contig18058_at Contig18058 - - 7e+0 At2g32360 ubiquitin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.91	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	O.I.	H.G.	S.X.
0.83	94.0	0.87	Contig15846_at	Contig15846	-	-	3e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	O.I.	H.G.	S.X.
0.80	92.5	0.92	Contig25390_at	Contig25390	-	-	6e+0	At1g06330	copper-binding family protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	O.I.	H.G.	S.X.
0.44	58.9	0.91	Contig18560_at	Contig18560	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.
0.29	35.5	0.92	Contig18058_at	Contig18058	-	-	7e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 99.5 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7 99.4 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0 98.9 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4 98.8 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5 98.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6 97.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5 96.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.5 96.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
4.4 96.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.8 95.7 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.8	99.5	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.0	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.5	98.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.4	96.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g63050, orthologous to the query gene, Contig17954_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g63050 825480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.67 81.6 At1g13195 837878 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. H.G. S.X.
0.65 79.6 At3g21210 821674 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM O.I. H.G. S.X.
0.65 79.6 At5g50120 835077 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA O.I. H.G. S.X.
0.65 79.6 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.61 76.7 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase O.I. H.G. S.X.
0.60 75.7 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM O.I. H.G. S.X.
0.56 73.0 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. H.G. S.X.
0.52 67.4 At3g24110 821997 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. H.G. S.X.
0.52 67.4 At1g79430 844281 APL (ALTERED PHLOEM DEVELOPMENT) Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. O.I. H.G. S.X.
0.51 66.3 At3g01670 821096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.49 63.5 At2g15680 816061 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. H.G. S.X.
0.49 63.5 At1g34480 840350 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO O.I. H.G. S.X.
0.43 55.3 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP O.I. H.G. S.X.
0.41 52.4 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.40 50.8 At5g17260 831591 anac086 (Arabidopsis NAC domain containing protein 86) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. H.G. S.X.
0.39 48.4 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. O.I. H.G. S.X.
0.39 48.4 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. O.I. H.G. S.X.
0.38 46.7 At1g61830 3767602 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. H.G. S.X.
0.35 41.6 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase O.I. H.G. S.X.
0.34 39.8 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. H.G. S.X.
0.33 38.1 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. H.G. S.X.
0.32 35.7 At5g11990 831072 proline-rich family protein F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At3g63050	825480	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.67	81.6	At1g13195	837878	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF	O.I.	H.G.	S.X.
0.65	79.6	At3g21210	821674	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM	O.I.	H.G.	S.X.
0.65	79.6	At5g50120	835077	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA	O.I.	H.G.	S.X.
0.65	79.6	At1g23530	838962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.61	76.7	At1g76040	843936	CPK29	member of Calcium Dependent Protein Kinase	O.I.	H.G.	S.X.
0.60	75.7	At5g26190	832688	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM	O.I.	H.G.	S.X.
0.56	73.0	At3g05620	819728	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	H.G.	S.X.
0.52	67.4	At3g24110	821997	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	H.G.	S.X.
0.52	67.4	At1g79430	844281	APL (ALTERED PHLOEM DEVELOPMENT)	Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.	O.I.	H.G.	S.X.
0.51	66.3	At3g01670	821096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.49	63.5	At2g15680	816061	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	H.G.	S.X.
0.49	63.5	At1g34480	840350	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO	O.I.	H.G.	S.X.
0.43	55.3	At5g07710	830664	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP	O.I.	H.G.	S.X.
0.41	52.4	At1g75720	843906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.40	50.8	At5g17260	831591	anac086 (Arabidopsis NAC domain containing protein 86)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.39	48.4	At5g03530	831810	RABC2A (RAB GTPASE HOMOLOG C2A)	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	O.I.	H.G.	S.X.
0.39	48.4	At2g15310	816020	ATARFB1A (ADP-ribosylation factor B1A)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	O.I.	H.G.	S.X.
0.38	46.7	At1g61830	3767602	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	At1g65910	842903	anac028 (Arabidopsis NAC domain containing protein 28)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	H.G.	S.X.
0.35	41.6	At1g06490	837160	ATGSL07 (glucan synthase-like 7)	encodes a gene similar to callose synthase	O.I.	H.G.	S.X.
0.34	39.8	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	H.G.	S.X.
0.33	38.1	At5g18970	832015	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	H.G.	S.X.
0.32	35.7	At5g11990	831072	proline-rich family protein	F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig17954_at
Gene name
Homology with Arabidopsis	Similar to At3g63050: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expression analysis

Gene ID Contig17954_at Gene name Homology with ArabidopsisSimilar to At3g63050: unknown protein (HF=2e+0) Module size 6 genes NF 0.63 %ile 85.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig17954_at

Gene name
Homology with Arabidopsis Similar to At3g63050: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.63

%ile 85.3

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays