Co-expression analysis

Gene ID Contig17914_at
Gene name
Homology with ArabidopsisSimilar to At4g20370: TSF (TWIN SISTER OF FT) (HF=1e+0)
Module size 11 genes
NF 0.72
%ile 92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.92Contig17914_atContig17914--1e+0At4g20370TSF (TWIN SISTER OF FT)O.I.H.G.S.X.
0.9198.10.93Contig12692_atContig12692--2e-4At5g57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.8092.50.95Contig12711_atContig12711--7e-1At3g24810ICK3O.I.H.G.S.X.
0.7891.20.94HVSMEa0006K17r2_atHVSMEa0006K17r2--3e+0At1g61667unknown proteinO.I.H.G.S.X.
0.7689.80.94HW07A09u_x_atHW07A09u--2e+0At5g46780VQ motif-containing proteinO.I.H.G.S.X.
0.7589.50.94Contig12692_s_atContig12692--2e-4At5g57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.7086.00.94Contig3237_atContig3237--4e-4At2g44160MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)O.I.H.G.S.X.
0.7086.00.94Contig3237_s_atContig3237--4e-4At2g44160MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)O.I.H.G.S.X.
0.6784.70.94Contig12701_atContig12701--9e-1At5g67390unknown proteinO.I.H.G.S.X.
0.6178.70.94EBma04_SQ002_L13_s_atEBma04_SQ002_L13--2e-1At5g11600unknown proteinO.I.H.G.S.X.
0.5369.70.95Contig20317_atContig20317--1e-17At1g65730YSL7 (YELLOW STRIPE LIKE 7)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
4.696.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.296.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.995.8GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.995.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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