Co-expression analysis

Gene ID	Contig17914_at
Gene name
Homology with Arabidopsis	Similar to At4g20370: TSF (TWIN SISTER OF FT) (HF=1e+0)
Module size	11 genes
NF	0.72
%ile	92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.92	Contig17914_at	Contig17914	-	-	1e+0	At4g20370	TSF (TWIN SISTER OF FT)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.93	Contig12692_at	Contig12692	-	-	2e-4	At5g57540	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.95	Contig12711_at	Contig12711	-	-	7e-1	At3g24810	ICK3	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.94	HVSMEa0006K17r2_at	HVSMEa0006K17r2	-	-	3e+0	At1g61667	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.94	HW07A09u_x_at	HW07A09u	-	-	2e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.94	Contig12692_s_at	Contig12692	-	-	2e-4	At5g57540	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig3237_at	Contig3237	-	-	4e-4	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig3237_s_at	Contig3237	-	-	4e-4	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig12701_at	Contig12701	-	-	9e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.94	EBma04_SQ002_L13_s_at	EBma04_SQ002_L13	-	-	2e-1	At5g11600	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig20317_at	Contig20317	-	-	1e-17	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.6	96.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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