Co-expression analysis

Gene ID	Contig1788_at
Gene name
Homology with Arabidopsis	Similar to At1g65930: isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (HF=8e-27)
Module size	6 genes
NF	0.62
%ile	84.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.97	Contig1788_at	Contig1788	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig14225_at	Contig14225	-	-	2e+0	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig13550_at	Contig13550	-	-	7e-7	At5g42660	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig10783_at	Contig10783	-	-	5e-26	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.9	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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