Co-expression analysis

Gene ID	Contig17887_at
Gene name
Homology with Arabidopsis	Similar to At4g32551: LUG (LEUNIG) (HF=2e-3)
Module size	13 genes
NF	0.23
%ile	28.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.4	0.94	Contig17887_at	Contig17887	-	-	2e-3	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig8297_at	Contig8297	-	-	2e-24	At1g79690	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig9524_at	Contig9524	-	-	2e+0	At1g31400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig16048_at	Contig16048	-	-	8e-1	At1g24880	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig9932_at	Contig9932	-	-	6e-7	At5g03530	RABC2A (RAB GTPASE HOMOLOG C2A)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig12154_at	Contig12154	-	-	2e+0	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig15747_at	Contig15747	-	-	8e-13	At3g21640	TWD1 (TWISTED DWARF 1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig11033_at	Contig11033	-	-	6e-7	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig17874_at	Contig17874	-	-	4e+0	At1g44010	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig21095_at	Contig21095	-	-	4e+0	At4g27620	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig10840_at	Contig10840	-	-	4e-6	At5g50780	ATP binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.8	95.7	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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