Co-expression analysis

Gene ID	Contig17872_at
Gene name
Homology with Arabidopsis	Similar to At3g24730: catalytic (HF=2e+0)
Module size	6 genes
NF	0.70
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.91	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.8	99.6	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.5	99.5	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.4	99.4	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.3	99.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.2	99.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.1	98.7	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.216882.1.S1_at, orthologous to the query gene, Contig17872_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	PtpAffx.216882.1.S1_at	At3g24730	-	-	1e+1	At2g06850	EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.142624.1.A1_at	At3g24730	-	-	5e-11	At1g12260	ANAC007 (ARABIDOPSIS NAC 007)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.203373.1.S1_at	At3g24730	hypothetical protein	-	7e-1	At2g35680	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.72440.1.S1_at	At3g24730	-	-	6e+0	At4g14520	DNA-directed RNA polymerase II-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.88771.1.A1_at	At3g24730	thioredoxin m	-	1e-3	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.223995.1.S1_at	At3g24730	hypothetical protein	-	9e-7	At5g27270	EMB976 (EMBRYO DEFECTIVE 976)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage