Co-expression analysis

Gene ID Contig17872_at
Gene name
Homology with ArabidopsisSimilar to At3g24730: catalytic (HF=2e+0)
Module size 6 genes
NF 0.70
%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig17872_atContig17872--2e+0At3g24730catalyticO.I.H.G.S.X.
0.8394.00.95Contig21078_atContig21078--6e-1At1g77765unknown proteinO.I.H.G.S.X.
0.6784.70.95Contig9656_atContig9656--1e+0At2g41225unknown proteinO.I.H.G.S.X.
0.6784.70.97Contig4499_s_atContig4499--4e-18At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.6380.30.91Contig4498_atContig4498--2e-1At1g28290AGP31 (arabinogalactan-protein 31)O.I.H.G.S.X.
0.3545.10.91Contig1403_atContig1403--1e-2At3g26430GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.999.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
15.899.6GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.599.5GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.499.4GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.399.4GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.299.4GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
8.198.7GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.596.7GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0547500, orthologous to the query gene, Contig17872_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5676.3Os04g0547500At3g24730--5e-4At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.9299.1Os08g0426200At3g24730--2e+0At3g17580unknown proteinO.I.H.G.S.X.
0.8395.8Os04g0366500At3g24730--1e+1At3g51060STY1 (STYLISH 1)O.I.H.G.S.X.
0.7591.9Os04g0134700At3g24730--1e+1At5g58500LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)O.I.H.G.S.X.
0.7391.1Os01g0528900At3g24730--4e+0At4g31150endonuclease V family proteinO.I.H.G.S.X.
0.7391.1Os01g0521100At3g24730-Hypothetical protein3e+0At4g10420-O.I.H.G.S.X.
0.6787.2Os10g0350100At3g24730--4e-1At3g47710bHLH family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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