Co-expression analysis

Gene ID Contig17857_at
Gene name
Homology with ArabidopsisSimilar to At3g02600: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) (HF=4e-5)
Module size 6 genes
NF 0.31
%ile 41.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87Contig17857_atContig17857--4e-5At3g02600LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)O.I.H.G.S.X.
0.5572.00.91HVSMEm0011M01r2_atHVSMEm0011M01r2--2e+1At4g18590-O.I.H.G.S.X.
0.4053.10.87EBes01_SQ002_D15_atEBes01_SQ002_D15--5e-2At1g15370-O.I.H.G.S.X.
0.3647.10.88Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.2326.10.88Contig25564_atContig25564--7e-1At3g30220unknown proteinO.I.H.G.S.X.
0.1412.90.84HVSMEl0001K15r2_atHVSMEl0001K15r2--2e+0At2g43445-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.3100.0GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM71142OWB-R stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.595.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM71144OWB-R stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.093.8GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
2.993.4GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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