Co-expression analysis

Gene ID	Contig17857_at
Gene name
Homology with Arabidopsis	Similar to At3g02600: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) (HF=4e-5)
Module size	6 genes
NF	0.31
%ile	41.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig17857_at	Contig17857	-	-	4e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	HVSMEm0011M01r2_at	HVSMEm0011M01r2	-	-	2e+1	At4g18590	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	EBes01_SQ002_D15_at	EBes01_SQ002_D15	-	-	5e-2	At1g15370	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.88	Contig18641_at	Contig18641	-	-	5e-4	At1g68850	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig25564_at	Contig25564	-	-	7e-1	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.84	HVSMEl0001K15r2_at	HVSMEl0001K15r2	-	-	2e+0	At2g43445	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
60.3	100.0	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.5	95.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.9	93.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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