Co-expression analysis

Gene ID	Contig17801_at
Gene name
Homology with Arabidopsis	Similar to At4g36620: zinc finger (GATA type) family protein (HF=1e+0)
Module size	8 genes
NF	0.46
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.90	Contig17801_at	Contig17801	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig10765_at	Contig10765	-	-	8e-38	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig20215_at	Contig20215	-	-	5e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.93	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig6358_at	Contig6358	-	-	6e-4	At1g06040	STO (SALT TOLERANCE)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig2053_at	Contig2053	-	-	5e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.8	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.2	99.0	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.0	98.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.2	98.7	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.0	98.7	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.219044.1.S1_at, orthologous to the query gene, Contig17801_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	PtpAffx.219044.1.S1_at	At4g36620	hypothetical protein	-	3e+1	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.111323.1.S1_at	At4g36620	hypothetical protein	-	3e-14	At4g02050	sugar transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.213256.1.S1_at	At4g36620	hypothetical protein	-	2e+0	At2g42190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.213829.1.S1_at	At4g36620	-	-	4e-1	At1g78210	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.121318.1.A1_at	At4g36620	-	-	4e+0	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.206460.1.S1_at	At4g36620	hypothetical protein	-	5e-24	At3g11980	MS2 (MALE STERILITY 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage