CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17801_at

Gene name
Homology with Arabidopsis Similar to At4g36620: zinc finger (GATA type) family protein (HF=1e+0)

Module size 8 genes

NF 0.46

%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.90 Contig17801_at Contig17801 - - 1e+0 At4g36620 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.63 80.3 0.92 Contig10765_at Contig10765 - - 8e-38 At5g48300 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1) O.I. H.G. S.X.
0.55 72.0 0.92 Contig20215_at Contig20215 - - 5e+0 At5g49050 - O.I. H.G. S.X.
0.42 55.2 0.93 HF13G03r_at HF13G03r - - 4e+0 At2g30020 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.38 49.5 0.92 Contig6358_at Contig6358 - - 6e-4 At1g06040 STO (SALT TOLERANCE) O.I. H.G. S.X.
0.38 49.5 0.94 Contig2053_at Contig2053 - - 5e+0 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) O.I. H.G. S.X.
0.33 42.6 0.93 Contig1393_at Contig1393 - - 1e-42 At3g46520 ACT12 (ACTIN-12) O.I. H.G. S.X.
0.29 35.5 0.94 Contig4486_at Contig4486 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.8 99.9 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
11.5 99.3 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.2 99.0 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
9.2 99.0 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
9.0 98.9 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8 98.9 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
8.2 98.7 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
8.1 98.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
8.0 98.7 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
8.0 98.7 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the rice gene, Os04g0166600, orthologous to the query gene, Contig17801_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.1 Os04g0166600 At4g36620 - Conserved hypothetical protein 1e-8 At1g19330 unknown protein O.I. H.G. S.X.
0.56 76.3 Os06g0679500 At4g36620 - - 2e-17 At1g05170 galactosyltransferase family protein O.I. H.G. S.X.
0.56 76.3 Os01g0901300 At4g36620 - Conserved hypothetical protein 2e-2 At5g55120 VTC5 (VITAMIN C DEFECTIVE 5) O.I. H.G. S.X.
0.43 55.4 Os01g0759000 At4g36620 - Conserved hypothetical protein 5e-1 At3g15357 unknown protein O.I. H.G. S.X.
0.40 51.1 Os07g0607500 At4g36620 - Protein of unknown function DUF1195 family protein 6e-3 At5g65650 unknown protein O.I. H.G. S.X.
0.32 36.3 Os02g0773400 At4g36620 - Ion transport protein family protein 4e-10 At3g17700 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1) O.I. H.G. S.X.
0.28 31.1 Os10g0415200 At4g36620 - Exocyst complex subunit Sec15-like family protein 1e-1 At1g22030 unknown protein O.I. H.G. S.X.
0.27 27.5 Os04g0689400 At4g36620 - Protein kinase domain containing protein 2e-9 At1g49730 protein kinase family protein O.I. H.G. S.X.
0.27 27.5 Os04g0501200 At4g36620 - Conserved hypothetical protein 6e-5 At5g57970 methyladenine glycosylase family protein O.I. H.G. S.X.
0.26 25.6 Os07g0573700 At4g36620 - UDP-galactose transporter family protein 7e+0 At4g29658 PRA1.C (PRENYLATED RAB ACCEPTOR 1.C) O.I. H.G. S.X.
0.26 25.6 Os01g0572700 At4g36620 - Parvalbumin family protein 4e-3 At5g08580 calcium-binding EF hand family protein O.I. H.G. S.X.
0.26 25.6 Os10g0358600 At4g36620 - Conserved hypothetical protein 1e-17 At1g19330 unknown protein O.I. H.G. S.X.
0.25 24.1 Os03g0105800 At4g36620 - Conserved hypothetical protein 6e-3 At4g11450 unknown protein O.I. H.G. S.X.
0.24 22.4 Os08g0101600 At4g36620 - Single-strand DNA endonuclease-1 4e-3 At3g53235 unknown protein O.I. H.G. S.X.
0.22 19.4 Os01g0766400 At4g36620 - Conserved hypothetical protein 2e+0 At3g53235 unknown protein O.I. H.G. S.X.
0.20 16.5 Os01g0898400 At4g36620 - Hypothetical protein 1e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) O.I. H.G. S.X.
0.20 16.5 Os02g0709100 At4g36620 - Conserved hypothetical protein 1e+1 At5g01200 myb family transcription factor O.I. H.G. S.X.
0.20 16.5 Os02g0118400 At4g36620 - Alpha-N-acetylgalactosaminidealpha-2,6-sialyltransferase (EC 2.4.99.3) (GalNAcalpha-2,6-sialyltransferase I) (ST6GalNAc I)(Sialyltransferase 7A) 1e-27 At3g48820 glycosyl transferase family 29 protein / sialyltransferase family protein O.I. H.G. S.X.
0.14 9.3 Os07g0158200 At4g36620 - TatD-related deoxyribonuclease family protein 4e-8 At3g52390 tatD-related deoxyribonuclease family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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