Co-expression analysis

Gene ID Contig17801_at
Gene name
Homology with ArabidopsisSimilar to At4g36620: zinc finger (GATA type) family protein (HF=1e+0)
Module size 8 genes
NF 0.46
%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.90Contig17801_atContig17801--1e+0At4g36620zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.6380.30.92Contig10765_atContig10765--8e-38At5g48300ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)O.I.H.G.S.X.
0.5572.00.92Contig20215_atContig20215--5e+0At5g49050-O.I.H.G.S.X.
0.4255.20.93HF13G03r_atHF13G03r--4e+0At2g30020protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3849.50.92Contig6358_atContig6358--6e-4At1g06040STO (SALT TOLERANCE)O.I.H.G.S.X.
0.3849.50.94Contig2053_atContig2053--5e+0At2g38880NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)O.I.H.G.S.X.
0.3342.60.93Contig1393_atContig1393--1e-42At3g46520ACT12 (ACTIN-12)O.I.H.G.S.X.
0.2935.50.94Contig4486_atContig4486--4e-1At5g16470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.899.9GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
11.599.3GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.299.0GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
9.098.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.898.9GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.298.7GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
8.198.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.098.7GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
8.098.7GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage