Co-expression analysis

Gene ID Contig1774_at
Gene name
Homology with ArabidopsisSimilar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=2e-72)
Module size 17 genes
NF 0.32
%ile 42.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6581.40.93Contig1774_atContig1774--2e-72At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.4458.90.95Contig6123_atContig6123--3e+0At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)O.I.H.G.S.X.
0.4356.40.95Contig11405_atContig11405--2e-9At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.4356.40.95Contig6466_atContig6466--5e-1At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.3950.50.95Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.3950.50.95Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.3747.90.94Contig2510_atContig2510--6e-4At3g05550hypoxia-responsive family proteinO.I.H.G.S.X.
0.3342.60.96Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3342.60.95Contig17958_atContig17958--2e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.3037.00.95Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.2935.50.96Contig13788_atContig13788--3e+0At3g18215unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig10970_atContig10970--2e-10At4g00290mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinO.I.H.G.S.X.
0.2326.10.95Contig10065_atContig10065--3e+0Atmg01260-O.I.H.G.S.X.
0.2122.60.95Contig12800_s_atContig12800--2e-5At5g46340O-acetyltransferase-relatedO.I.H.G.S.X.
0.2021.10.94Contig9161_atContig9161--1e-31At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.1919.60.95HU05N01u_atHU05N01u--1e+0At5g19830aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.1818.20.95Contig7333_atContig7333--6e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.893.1GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.792.7GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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