Co-expression analysis

Gene ID	Contig1774_at
Gene name
Homology with Arabidopsis	Similar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=2e-72)
Module size	17 genes
NF	0.32
%ile	42.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.93	Contig1774_at	Contig1774	-	-	2e-72	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig6123_at	Contig6123	-	-	3e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig11405_at	Contig11405	-	-	2e-9	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig6466_at	Contig6466	-	-	5e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig2510_at	Contig2510	-	-	6e-4	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig11372_at	Contig11372	-	-	5e-7	At3g27100	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig13788_at	Contig13788	-	-	3e+0	At3g18215	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig10970_at	Contig10970	-	-	2e-10	At4g00290	mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig10065_at	Contig10065	-	-	3e+0	Atmg01260	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig12800_s_at	Contig12800	-	-	2e-5	At5g46340	O-acetyltransferase-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig9161_at	Contig9161	-	-	1e-31	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	HU05N01u_at	HU05N01u	-	-	1e+0	At5g19830	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig7333_at	Contig7333	-	-	6e-2	At3g54360	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.8	93.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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