Co-expression analysis

Gene ID Contig17728_at
Gene name
Homology with ArabidopsisSimilar to At3g21510: AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) (HF=2e+0)
Module size 11 genes
NF 0.24
%ile 30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.96Contig17728_atContig17728--2e+0At3g21510AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)O.I.H.G.S.X.
0.3545.10.96HY08N07u_s_atHY08N07u--4e+0At3g28870-O.I.H.G.S.X.
0.3240.30.96Contig1502_s_atContig1502--9e-1At5g63230-O.I.H.G.S.X.
0.2935.50.96Contig18044_atContig18044--1e+0At3g47070unknown proteinO.I.H.G.S.X.
0.2630.40.96Contig11017_atContig11017--1e+0At1g15840unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig9787_atContig9787--4e+0At2g27505-O.I.H.G.S.X.
0.2326.10.97Contig14329_atContig14329--4e-4At1g04870PRMT10O.I.H.G.S.X.
0.1716.90.97Contig8718_atContig8718--7e+0Atmg00150-O.I.H.G.S.X.
0.1716.90.96Contig12767_atContig12767--2e+0At4g24660ATHB22 (HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.1412.90.96Contig4131_atContig4131--2e-23At1g77490TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)O.I.H.G.S.X.
0.1311.60.96Contig5612_atContig5612--3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.199.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
15.099.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
12.299.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.597.6GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.597.6GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.997.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.096.0GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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