Co-expression analysis

Gene ID	Contig17621_at
Gene name
Homology with Arabidopsis	Similar to At1g73310: scpl4 (serine carboxypeptidase-like 4) (HF=1e-1)
Module size	6 genes
NF	0.65
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.86	Contig17621_at	Contig17621	-	-	1e-1	At1g73310	scpl4 (serine carboxypeptidase-like 4)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig2632_s_at	Contig2632	-	-	4e+0	At5g37550	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.90	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig26310_at	Contig26310	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, Zm.3150.1.S1_at, orthologous to the query gene, Contig17621_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.3150.1.S1_at	At1g73310	hypothetical protein LOC100216996	-	1e-3	At3g12203	scpl17 (serine carboxypeptidase-like 17)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.5858.1.A1_at	At1g73310	-	-	7e+0	At1g71130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.10778.1.A1_a_at	At1g73310	FIP1	-	4e-1	At4g40100	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.16232.1.A1_x_at	At1g73310	hypothetical protein LOC100278121	-	4e-3	At3g46430	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.6364.1.A1_at	At1g73310	hypothetical protein LOC100277739	-	8e-1	At2g22060	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.334.1.S1_at	At1g73310	plasma membrane intrinsic protein1	-	5e-11	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.19321.1.S1_at	At1g73310	-	-	1e+0	At5g41860	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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