Co-expression analysis

Gene ID Contig17621_at
Gene name
Homology with ArabidopsisSimilar to At1g73310: scpl4 (serine carboxypeptidase-like 4) (HF=1e-1)
Module size 6 genes
NF 0.65
%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.86Contig17621_atContig17621--1e-1At1g73310scpl4 (serine carboxypeptidase-like 4)O.I.H.G.S.X.
0.6178.70.87Contig2632_s_atContig2632--4e+0At5g37550unknown proteinO.I.H.G.S.X.
0.6178.70.89Contig4707_x_atContig4707--5e+0At2g35900unknown proteinO.I.H.G.S.X.
0.6178.70.90Contig4710_atContig4710--3e-1At2g17560HMGB4 (HIGH MOBILITY GROUP B 4)O.I.H.G.S.X.
0.6077.30.89Contig26310_atContig26310--5e+0At5g38800AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)O.I.H.G.S.X.
0.5066.90.93Contig8661_atContig8661--1e+0At3g48298unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
2.893.1GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2669.1.S1_at, orthologous to the query gene, Contig17621_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9Gma.2669.1.S1_atAt1g73310--4e-6At5g09640SCPL19O.I.H.G.S.X.
0.3243.7GmaAffx.90450.1.S1_atAt1g73310--3e-2At4g24380unknown proteinO.I.H.G.S.X.
0.2532.6Gma.6602.1.S1_x_atAt1g73310--7e-118At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)O.I.H.G.S.X.
0.1619.7GmaAffx.86528.1.S1_atAt1g73310--2e-5At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.1518.7GmaAffx.8750.1.A1_atAt1g73310--3e+0At5g22710-O.I.H.G.S.X.
0.1316.3GmaAffx.17756.1.S1_atAt1g73310--9e-6At5g18890inosine-uridine preferring nucleoside hydrolase family proteinO.I.H.G.S.X.
0.1316.3GmaAffx.45872.1.S1_atAt1g73310--2e-23At4g29220PFK1 (PHOSPHOFRUCTOKINASE 1)O.I.H.G.S.X.
0.1215.1GmaAffx.91300.1.S1_s_atAt1g73310--9e-67At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.069.0GmaAffx.45414.1.S1_atAt1g73310--1e+0At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.069.0Gma.4739.1.S1_atAt1g73310--2e-19At4g21570unknown proteinO.I.H.G.S.X.
0.024.5GmaAffx.74863.1.S1_s_atAt1g73310--6e-35At5g56950NAP1O.I.H.G.S.X.
0.024.5Gma.254.1.S1_atAt1g73310acyl-CoA oxidase-2e-45At2g35690ACX5 (ACYL-COA OXIDASE 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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