Co-expression analysis

Gene ID Contig17621_at
Gene name
Homology with ArabidopsisSimilar to At1g73310: scpl4 (serine carboxypeptidase-like 4) (HF=1e-1)
Module size 6 genes
NF 0.65
%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.86Contig17621_atContig17621--1e-1At1g73310scpl4 (serine carboxypeptidase-like 4)O.I.H.G.S.X.
0.6178.70.87Contig2632_s_atContig2632--4e+0At5g37550unknown proteinO.I.H.G.S.X.
0.6178.70.89Contig4707_x_atContig4707--5e+0At2g35900unknown proteinO.I.H.G.S.X.
0.6178.70.90Contig4710_atContig4710--3e-1At2g17560HMGB4 (HIGH MOBILITY GROUP B 4)O.I.H.G.S.X.
0.6077.30.89Contig26310_atContig26310--5e+0At5g38800AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)O.I.H.G.S.X.
0.5066.90.93Contig8661_atContig8661--1e+0At3g48298unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.893.1GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
2.893.1GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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