Co-expression analysis

Gene ID Contig17553_at
Gene name
Homology with ArabidopsisSimilar to At1g08040: unknown protein (HF=2e-34)
Module size 18 genes
NF 0.45
%ile 62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.92Contig17553_atContig17553--2e-34At1g08040unknown proteinO.I.H.G.S.X.
0.6279.10.93rbags29h17_s_atrbags29h17--3e+0At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5975.80.94Contig9960_atContig9960aluminum activated citrate transporter-4e-2At3g08040FRD3 (FERRIC REDUCTASE DEFECTIVE 3)O.I.H.G.S.X.
0.5774.90.93Contig19854_s_atContig19854--2e+0At2g40085unknown proteinO.I.H.G.S.X.
0.5774.90.93Contig10947_atContig10947--2e+0At5g27200ACP5 (acyl carrier protein 5)O.I.H.G.S.X.
0.5572.00.93Contig2491_atContig2491--1e+1At5g52770heavy-metal-associated protein-relatedO.I.H.G.S.X.
0.5268.30.94Contig10823_atContig10823--2e+0At5g62627-O.I.H.G.S.X.
0.4863.20.94Contig9446_atContig9446--1e-11At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.4762.20.94Contig6698_atContig6698--9e-19At1g20330SMT2 (STEROL METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.4458.90.93Contig10423_atContig10423--1e-20At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.4255.20.95Contig9449_atContig9449--3e-18At2g27350OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.3950.50.93Contig12644_atContig12644--1e+0At4g02430pre-mRNA splicing factor, putative / SR1 protein, putativeO.I.H.G.S.X.
0.3950.50.95Contig44_atContig44--3e-23At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.3138.60.94HS09F12u_s_atHS09F12u--7e-1At2g33780VQ motif-containing proteinO.I.H.G.S.X.
0.3037.00.94Contig8511_atContig8511--5e+0At5g44850-O.I.H.G.S.X.
0.3037.00.94Contig13825_atContig13825--2e-1At2g32440KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2)O.I.H.G.S.X.
0.3037.00.94Contig20730_s_atContig20730--5e-3At1g73885unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig15511_atContig15511--9e+0At5g18250unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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