Co-expression analysis

Gene ID	Contig17534_at
Gene name
Homology with Arabidopsis	Similar to At4g01040: glycosyl hydrolase family 18 protein (HF=1e-5)
Module size	6 genes
NF	0.39
%ile	53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig17534_at	Contig17534	-	-	1e-5	At4g01040	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	HX08J20r_s_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig12140_at	Contig12140	-	-	4e+0	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.0	93.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.91380.1.A1_at, orthologous to the query gene, Contig17534_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.91380.1.A1_at	At4g01040	-	-	7e-5	At4g01040	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.6535.1.A1_at	At4g01040	-	-	6e-10	At4g25840	GPP1 (glycerol-3-phosphatase 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.25325.2.A1_a_at	At4g01040	-	-	1e-1	At1g50710	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.1697.1.S1_a_at	At4g01040	-	-	6e-19	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.128504.2.A1_x_at	At4g01040	-	-	4e+0	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.14393.1.S1_at	At4g01040	-	-	8e-35	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.28748.1.S1_a_at	At4g01040	-	-	3e-12	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.3102.1.A1_at	At4g01040	-	-	2e+0	At5g67480	BT4 (BTB AND TAZ DOMAIN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.7745.2.S1_at	At4g01040	-	-	4e+0	At3g14860	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.2753.1.A1_a_at	At4g01040	-	-	8e-2	At1g07210	30S ribosomal protein S18 family	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.23710.2.A1_x_at	At4g01040	-	-	1e-31	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.4085.1.S1_at	At4g01040	-	-	5e-2	At4g19006	26S proteasome regulatory subunit, putative (RPN9)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.23710.1.S1_x_at	At4g01040	-	-	5e-77	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.12678.1.S1_a_at	At4g01040	-	-	2e-6	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.9553.1.S1_at	At4g01040	-	-	8e+0	At3g46430	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6642.3.S1_at	At4g01040	-	-	1e-12	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.14429.1.S1_at	At4g01040	-	-	1e-20	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.11802.1.S1_at	At4g01040	-	-	2e-6	At2g18990	TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.128504.1.S1_s_at	At4g01040	-	-	3e+0	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.6358.1.S1_at	At4g01040	-	-	3e-5	At2g27100	SE (SERRATE)	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.52682.1.S1_s_at	At4g01040	eIF-2 beta subunit	-	3e-4	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.5961.1.S1_s_at	At4g01040	-	-	1e-1	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.28763.2.S1_at	At4g01040	-	-	8e-27	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.8245.1.S1_at	At4g01040	-	-	2e-35	At1g04810	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.2965.2.S1_x_at	At4g01040	-	-	8e+0	Atmg01030	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.2319.3.S1_a_at	At4g01040	-	-	4e-3	At1g21320	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.23710.3.S1_a_at	At4g01040	-	-	5e-34	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.26926.1.S1_at	At4g01040	-	-	4e-1	At4g35510	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.23445.1.S1_at	At4g01040	-	-	1e+0	At3g25150	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.14429.1.S1_a_at	At4g01040	-	-	1e-20	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.25179.1.S1_at	At4g01040	-	-	9e-35	At3g03960	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.1116.1.S1_a_at	At4g01040	-	-	1e-47	At2g47640	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.24960.1.S1_x_at	At4g01040	-	-	2e-31	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.24960.1.S1_at	At4g01040	-	-	2e-31	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.23202.1.S1_at	At4g01040	Ribosomal protein P1	-	4e-1	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.128661.1.S1_x_at	At4g01040	-	-	5e-47	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.1335.1.S1_at	At4g01040	-	-	4e-85	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.1289.3.S1_at	At4g01040	-	-	8e-34	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.6642.1.S1_a_at	At4g01040	-	-	1e-18	At3g61760	ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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