Co-expression analysis

Gene ID	Contig17534_at
Gene name
Homology with Arabidopsis	Similar to At4g01040: glycosyl hydrolase family 18 protein (HF=1e-5)
Module size	6 genes
NF	0.39
%ile	53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig17534_at	Contig17534	-	-	1e-5	At4g01040	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	HX08J20r_s_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig12140_at	Contig12140	-	-	4e+0	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.0	93.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os.662.1.S1_at, orthologous to the query gene, Contig17534_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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