Co-expression analysis

Gene ID Contig17534_at
Gene name
Homology with ArabidopsisSimilar to At4g01040: glycosyl hydrolase family 18 protein (HF=1e-5)
Module size 6 genes
NF 0.39
%ile 53.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig17534_atContig17534--1e-5At4g01040glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.7388.70.95HX08J20r_atHX08J20r--2e+0At4g15920-O.I.H.G.S.X.
0.6380.30.95Contig18246_atContig18246--2e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.5572.00.95HX08J20r_s_atHX08J20r--2e+0At4g15920-O.I.H.G.S.X.
0.2224.20.95Contig12140_atContig12140--4e+0At5g54440unknown proteinO.I.H.G.S.X.
0.1818.20.96Contig10032_atContig10032--7e-3At5g09850transcription elongation factor-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.198.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.294.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.093.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.948.1.A1_at, orthologous to the query gene, Contig17534_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.9Gma.948.1.A1_atAt4g01040--4e+0At5g5265040S ribosomal protein S10 (RPS10C)O.I.H.G.S.X.
0.3853.3Gma.1976.1.A1_atAt4g01040--9e-1At5g44565unknown proteinO.I.H.G.S.X.
0.3650.8GmaAffx.68730.1.A1_atAt4g01040--5e-5At2g18280AtTLP2 (TUBBY LIKE PROTEIN 2)O.I.H.G.S.X.
0.3650.8Gma.3805.2.S1_atAt4g01040--2e-1At5g08220unknown proteinO.I.H.G.S.X.
0.2126.6Gma.1814.1.S1_atAt4g01040--4e-57At3g11730ATFP8O.I.H.G.S.X.
0.0912.0Gma.8237.1.A1_atAt4g01040--9e-1At1g63030ddf2 (DWARF AND DELAYED FLOWERING 2)O.I.H.G.S.X.
0.0710.2GmaAffx.90362.1.A1_atAt4g01040--4e-28At1g11890SEC22O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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