Co-expression analysis

Gene ID	Contig17530_at
Gene name
Homology with Arabidopsis	Similar to At4g00380: XH/XS domain-containing protein / XS zinc finger domain-containing protein (HF=6e-3)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.88	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.89	Contig3051_s_at	Contig3051	-	-	8e-6	At3g11930	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig21476_at	Contig21476	-	-	5e+0	At5g39581	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.89	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.3	98.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage