Co-expression analysis

Gene ID	Contig1752_s_at
Gene name
Homology with Arabidopsis	Similar to At1g15270: - (HF=3e-7)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.90	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.89	Contig3051_s_at	Contig3051	-	-	8e-6	At3g11930	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig21476_at	Contig21476	-	-	5e+0	At5g39581	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.88	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.89	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.3	98.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1183Contig1_s_at, orthologous to the query gene, Contig1752_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	PsAffx.CL1183Contig1_s_at	At1g15270	-	-	1e+1	At4g28850	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.75	89.5	PsAffx.CL38Contig1_at	At1g15270	-	-	6e+0	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.74	89.2	PsAffx.CL100Contig1_at	At1g15270	-	-	4e+0	At4g03580	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL45Contig1_at	At1g15270	-	-	6e-18	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.CL2Contig9_at	At1g15270	-	-	2e-21	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.CL988Contig1_at	At1g15270	-	-	1e+1	At5g59180	NRPB7	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.CL167Contig1_at	At1g15270	-	-	3e-5	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.CL394Contig1_s_at	At1g15270	-	-	7e+0	At4g31830	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	PsAffx.CL42Contig1_s_at	At1g15270	-	-	1e-2	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.28	39.0	PsAffx.CL85Contig1_at	At1g15270	-	-	4e-10	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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