Co-expression analysis

Gene ID Contig1752_s_at
Gene name
Homology with ArabidopsisSimilar to At1g15270: - (HF=3e-7)
Module size 6 genes
NF 0.59
%ile 81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88Contig1752_s_atContig1752--3e-7At1g15270-O.I.H.G.S.X.
0.9198.10.90Contig17530_atContig17530--6e-3At4g00380XH/XS domain-containing protein / XS zinc finger domain-containing proteinO.I.H.G.S.X.
0.8092.50.89Contig3051_s_atContig3051--8e-6At3g11930universal stress protein (USP) family proteinO.I.H.G.S.X.
0.7388.70.88Contig21476_atContig21476--5e+0At5g39581unknown proteinO.I.H.G.S.X.
0.3138.60.88Contig21980_atContig21980--1e-1At3g24450copper-binding family proteinO.I.H.G.S.X.
0.2528.90.89Contig25140_atContig25140--1e-10At2g4757060S ribosomal protein L18 (RPL18A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.899.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.398.8GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.797.7GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.797.7GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.396.4GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.296.3GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g15270, orthologous to the query gene, Contig1752_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g15270838094-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPOO.I.H.G.S.X.
0.3745.0At1g73790843714unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.3541.6At3g59810825150small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;AMFOPO.I.H.G.S.X.
0.3338.1At2g23090816839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2624.4At3g52860824452unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.2624.4At5g16470831508zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POMO.I.H.G.S.X.
0.2522.6At2g27030817245CAM5 (CALMODULIN 5)encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.O.I.H.G.S.X.
0.2319.3At5g57860835896ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PMVOO.I.H.G.S.X.
0.2319.3At3g09735820131DNA-binding S1FA family proteinF:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;PO.I.H.G.S.X.
0.2319.3At4g01710828087CRK (CROOKED)belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.O.I.H.G.S.X.
0.2319.3At1g29990839878PDF6 (PREFOLDIN 6)Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.O.I.H.G.S.X.
0.2014.4At5g11760831048unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OFPO.I.H.G.S.X.
0.2014.4At4g21105827858cytochrome-c oxidase/ electron carrierF:electron carrier activity, cytochrome-c oxidase activity;P:unknown;C:mitochondrion, plasma membrane;PO.I.H.G.S.X.
0.1912.7At5g54760835566eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBO.I.H.G.S.X.
0.1912.7At5g63670836487SPT42 (SPT4 HOMOLOG 2)F:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription, N-terminal protein myristoylation;C:nucleus;MFOPO.I.H.G.S.X.
0.1811.4At4g32930829430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.1811.4At5g58240835936bis(5'-adenosyl)-triphosphatase, putativeEncodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities.O.I.H.G.S.X.
0.1710.2At5g20570832179RBX1 (RING-BOX 1)Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.O.I.H.G.S.X.
0.1710.2At5g27720832834emb1644 (embryo defective 1644)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPBVO.I.H.G.S.X.
0.1710.2At2g18040816316PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bondsO.I.H.G.S.X.
0.157.8At2g30410817592KIS (KIESEL)mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor AO.I.H.G.S.X.
0.157.8At1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.H.G.S.X.
0.157.8At5g09920830853NRPB4Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)O.I.H.G.S.X.
0.146.8At3g03070821133NADH-ubiquinone oxidoreductase-relatedF:unknown;P:unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.135.8At1g66410842959CAM4 (calmodulin 4)encodes a calmodulinO.I.H.G.S.X.
0.135.8At3g62840825459-F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.H.G.S.X.
0.124.9At1g15370838106-F:molecular_function unknown;P:transport;C:unknown;POFO.I.H.G.S.X.
0.114.1At5g08060830700unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POO.I.H.G.S.X.
0.114.1At1g26630839203FBR12 (FUMONISIN B1-RESISTANT12)Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.O.I.H.G.S.X.
0.103.4At5g51700835244PBS2 (PPHB SUSCEPTIBLE 2)Encodes a resistance signalling protein with two zinc binding (CHORD) domains that are highly conserved across eukaryotic phyla. Mutant has reduced RPS5 and RPM1 mediated resistance. Potentially involved in transduction of R gene mediated disease resistance. Required for R protein accumulation.O.I.H.G.S.X.
0.092.8At2g47110819323UBQ6polyubiquitin geneO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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