Co-expression analysis

Gene ID Contig17478_at
Gene name
Homology with ArabidopsisSimilar to At2g17695: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.27
%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.95Contig17478_atContig17478--2e+0At2g17695unknown proteinO.I.H.G.S.X.
0.6784.70.94Contig7454_atContig7454--1e-8At1g05850POM1 (POM-POM1)O.I.H.G.S.X.
0.3240.30.95Contig13169_atContig13169--2e-24At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.1919.60.94Contig832_s_atContig832--9e-6At5g66570PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)O.I.H.G.S.X.
0.1311.60.95Contig10896_atContig10896--5e-41At3g03120ATARFB1C (ADP-ribosylation factor B1C)O.I.H.G.S.X.
0.1311.60.95Contig2443_atContig2443--5e-3At5g05230ubiquitin-protein ligaseO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.94Contig8654_atContig8654--3e-90At5g18620CHR17 (CHROMATIN REMODELING FACTOR17)O.I.H.G.S.X.
0.5369.70.92HS08I21u_s_atHS08I21u--8e-1At4g28460unknown proteinO.I.H.G.S.X.
0.4863.20.89Contig16592_atContig16592--1e-3At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.4661.00.91Contig19205_atContig19205--7e+0At4g32020unknown proteinO.I.H.G.S.X.
0.4458.90.90Contig11278_atContig11278--5e-33At5g10290leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4458.90.92Contig20995_atContig20995--2e+0At3g12587unknown proteinO.I.H.G.S.X.
0.4458.90.94rbags24g13_atrbags24g13--1e-1At1g73885unknown proteinO.I.H.G.S.X.
0.4053.10.91Contig9036_atContig9036--3e+0At5g48500unknown proteinO.I.H.G.S.X.
0.4053.10.91HB10F07r_atHB10F07r--2e+0At1g24430transferase/ transferase, transferring acyl groups other than amino-acyl groupsO.I.H.G.S.X.
0.4053.10.94Contig13590_atContig13590--2e-2At2g31070TCP10 (TCP DOMAIN PROTEIN 10)O.I.H.G.S.X.
0.3647.10.91Contig26000_atContig26000--5e+0At5g08300succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.3342.60.91Contig22709_atContig22709--6e+0At5g06790unknown proteinO.I.H.G.S.X.
0.3342.60.93Contig9897_atContig9897--6e+0At4g14690ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)O.I.H.G.S.X.
0.3342.60.94Contig9643_atContig9643--3e+0At3g52630-O.I.H.G.S.X.
0.3240.30.88HW08E22u_atHW08E22u--9e-1At1g64185lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.3138.60.90Contig8317_atContig8317--5e+0At2g27480calcium ion bindingO.I.H.G.S.X.
0.3138.60.95Contig8266_atContig8266--2e+0At1g44318hemb2O.I.H.G.S.X.
0.3037.00.90Contig10354_atContig10354--1e-1At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.2935.50.90Contig8104_atContig8104--1e-3At3g26932DRB3 (dsRNA-binding protein 3)O.I.H.G.S.X.
0.2935.50.93Contig11635_atContig11635--2e-1At1g02405proline-rich family proteinO.I.H.G.S.X.
0.2935.50.93Contig16060_atContig16060--4e-2At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2732.10.89Contig3953_s_atContig3953--5e+0At4g29660EMB2752 (EMBRYO DEFECTIVE 2752)O.I.H.G.S.X.
0.2732.10.91HS18M03u_s_atHS18M03u--6e-1At2g20070-O.I.H.G.S.X.
0.2732.10.94Contig13857_atContig13857--4e-2At4g02050sugar transporter, putativeO.I.H.G.S.X.
0.2732.10.94Contig4459_atContig4459--4e-7At3g57520AtSIP2 (Arabidopsis thaliana seed imbibition 2)O.I.H.G.S.X.
0.2630.40.89Contig22331_atContig22331--6e+0At5g26805unknown proteinO.I.H.G.S.X.
0.2528.90.88Contig14853_s_atContig14853--1e+0At1g44608unknown proteinO.I.H.G.S.X.
0.2528.90.88Contig15420_atContig15420--4e-1At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.2528.90.92Contig6110_atContig6110--2e-8At1g05500NTMC2T2.1O.I.H.G.S.X.
0.2528.90.93Contig8418_atContig8418--4e-20At5g18580FASS (FASS 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.8GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.897.0GSM372990genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.096.0GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.795.5GSM372987genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.595.1GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM372999genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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