CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17478_at

Gene name
Homology with Arabidopsis Similar to At2g17695: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.27

%ile 34.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.95 Contig17478_at Contig17478 - - 2e+0 At2g17695 unknown protein O.I. H.G. S.X.
0.67 84.7 0.94 Contig7454_at Contig7454 - - 1e-8 At1g05850 POM1 (POM-POM1) O.I. H.G. S.X.
0.32 40.3 0.95 Contig13169_at Contig13169 - - 2e-24 At1g76860 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.19 19.6 0.94 Contig832_s_at Contig832 - - 9e-6 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) O.I. H.G. S.X.
0.13 11.6 0.95 Contig10896_at Contig10896 - - 5e-41 At3g03120 ATARFB1C (ADP-ribosylation factor B1C) O.I. H.G. S.X.
0.13 11.6 0.95 Contig2443_at Contig2443 - - 5e-3 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.8 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8 97.0 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.0 96.0 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.7 95.5 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5 95.1 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM372999 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves

Inter-species module comparison

A co-expression module including the grape gene, 1612574_s_at, orthologous to the query gene, Contig17478_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1612574_s_at At2g17695 hypothetical protein LOC100250803 - 1e+0 At5g18050 auxin-responsive protein, putative O.I. H.G. S.X.
0.33 45.7 1621127_s_at At2g17695 hypothetical protein LOC100257097 - 5e-1 At3g03270 universal stress protein (USP) family protein / early nodulin ENOD18 family protein O.I. H.G. S.X.
0.07 7.8 1621841_at At2g17695 hypothetical protein LOC100258708 - 9e-3 Atcg01000 - O.I. H.G. S.X.
0.06 6.8 1609837_s_at At2g17695 hypothetical protein LOC100258413 - 3e-1 At4g35725 unknown protein O.I. H.G. S.X.
0.04 5.2 1609293_at At2g17695 hypothetical protein LOC100242047 - 3e-41 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) O.I. H.G. S.X.
0.02 3.2 1611291_at At2g17695 hypothetical protein LOC100261243 - 3e-67 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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