Co-expression analysis

Gene ID Contig17434_at
Gene name
Homology with ArabidopsisSimilar to At3g56900: aladin-related / adracalin-related (HF=8e-8)
Module size 6 genes
NF 0.11
%ile 13.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88Contig17434_atContig17434--8e-8At3g56900aladin-related / adracalin-relatedO.I.H.G.S.X.
0.3647.10.96Contig17597_atContig17597--6e+0At5g61100-O.I.H.G.S.X.
0.1311.60.94Contig10778_atContig10778--6e-1At1g47680unknown proteinO.I.H.G.S.X.
0.119.40.95Contig26597_atContig26597--9e-2At5g47330palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.075.80.95Contig13597_atContig13597--2e-28At3g62910APG3 (ALBINO AND PALE GREEN)O.I.H.G.S.X.
0.043.40.93Contig1548_atContig1548--1e-54At5g10360EMB3010 (embryo defective 3010)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.2GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
8.398.8GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
8.098.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
7.998.7GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.998.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
6.898.3GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
6.298.0GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
6.298.0GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.097.9GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.797.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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