Co-expression analysis

Gene ID	Contig17424_at
Gene name
Homology with Arabidopsis	Similar to At5g16060: - (HF=6e-6)
Module size	7 genes
NF	0.44
%ile	60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.97	Contig17424_at	Contig17424	-	-	6e-6	At5g16060	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13002_at	Contig13002	-	-	2e-10	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig12106_at	Contig12106	-	-	3e-6	At4g21460	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig1498_s_at	Contig1498	-	-	7e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig8146_at	Contig8146	-	-	6e-30	At1g79830	GC5 (golgin candidate 5)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.97	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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