Co-expression analysis

Gene ID	Contig17394_at
Gene name
Homology with Arabidopsis	Similar to At3g02760: ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (HF=5e-4)
Module size	6 genes
NF	0.12
%ile	14.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.94	Contig17394_at	Contig17394	-	-	5e-4	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig20286_at	Contig20286	-	-	4e+0	At5g59050	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig18157_at	Contig18157	-	-	1e-8	At4g22720	glycoprotease M22 family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.96	Contig10541_at	Contig10541	-	-	5e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig17268_at	Contig17268	-	-	2e-6	At1g65280	heat shock protein binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.8	99.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.2	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.6	99.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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