Co-expression analysis

Gene ID	Contig17345_at
Gene name
Homology with Arabidopsis	Similar to At2g20750: ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) (HF=6e-3)
Module size	6 genes
NF	0.32
%ile	42.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig17345_at	Contig17345	-	-	6e-3	At2g20750	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig6328_at	Contig6328	-	-	9e-21	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig12676_at	Contig12676	-	-	3e-1	At4g28150	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig2506_s_at	Contig2506	-	-	9e-41	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig20357_at	Contig20357	-	-	5e+0	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig18506_at	Contig18506	-	-	2e+0	At2g35480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.6	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.2	99.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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