Co-expression analysis

Gene ID Contig17311_at
Gene name
Homology with ArabidopsisSimilar to At3g20120: CYP705A21 (HF=4e-1)
Module size 9 genes
NF 0.17
%ile 20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5268.30.93Contig17311_atContig17311--4e-1At3g20120CYP705A21O.I.H.G.S.X.
0.4053.10.95Contig16878_atContig16878--6e-7At2g37050kinaseO.I.H.G.S.X.
0.2732.10.94Contig4074_atContig4074--8e-7At4g21570unknown proteinO.I.H.G.S.X.
0.2224.20.96Contig11968_atContig11968--3e-1At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.2122.60.94Contig12503_atContig12503--7e+0At5g54490PBP1 (PINOID-BINDING PROTEIN 1)O.I.H.G.S.X.
0.2122.60.95Contig875_atContig875--2e-3At3g05150sugar transporter family proteinO.I.H.G.S.X.
0.1412.90.94Contig19125_atContig19125--4e-3At2g33980atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22)O.I.H.G.S.X.
0.108.40.94Contig15299_atContig15299--1e-1At4g25010nodulin MtN3 family proteinO.I.H.G.S.X.
0.075.80.94Contig6879_atContig6879--4e-24At1g75330OTC (ORNITHINE CARBAMOYLTRANSFERASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.9GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.494.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.194.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.093.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.893.1GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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