Co-expression analysis

Gene ID Contig17246_at
Gene name
Homology with ArabidopsisSimilar to At1g06850: AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) (HF=5e-3)
Module size 11 genes
NF 0.50
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.81Contig17246_atContig17246--5e-3At1g06850AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)O.I.H.G.S.X.
0.6784.70.85HVSMEl0014B21r2_atHVSMEl0014B21r2--3e+0At4g20220-O.I.H.G.S.X.
0.5674.30.83Contig10730_atContig10730--9e-2At1g25425CLE43 (CLAVATA3/ESR-RELATED 43)O.I.H.G.S.X.
0.5066.90.80Contig17133_atContig17133--2e+0At3g13140hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5066.90.88Contig7115_atContig7115--9e-1At5g51100FSD2 (FE SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4863.20.84Contig7504_atContig7504--1e+0At1g52825unknown proteinO.I.H.G.S.X.
0.4559.30.80Contig15774_atContig15774--3e-2At5g54200WD-40 repeat family proteinO.I.H.G.S.X.
0.4458.90.83S0000200065C10F1_atS0000200065C10F1--2e+0At2g44700kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4255.20.87Contig17181_atContig17181--6e-4At5g39590-O.I.H.G.S.X.
0.4053.10.83HVSMEb0003K10r2_x_atHVSMEb0003K10r2--2e-2At2g29870major intrinsic family protein / MIP family proteinO.I.H.G.S.X.
0.2630.40.83Contig15685_atContig15685--7e-1At1g23780F-box family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.299.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.899.1GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.398.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
8.398.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage